Experiment: McCas_H2_complete rubidium chloride 125 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS00245 and MMP_RS00250 are separated by 11 nucleotides MMP_RS00250 and MMP_RS00255 are separated by 9 nucleotides
MMP_RS00245: MMP_RS00245 - type II secretion system F family protein, at 55,876 to 56,934
_RS00245
MMP_RS00250: MMP_RS00250 - Flp pilus assembly complex ATPase component TadA, at 56,946 to 58,595
_RS00250
MMP_RS00255: MMP_RS00255 - transcription initiation factor IIB, at 58,605 to 59,624
_RS00255
Position (kb) 56
57
58
59 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 56.151 kb on - strand, within MMP_RS00245 at 56.152 kb on + strand, within MMP_RS00245 at 56.193 kb on - strand, within MMP_RS00245 at 56.194 kb on + strand, within MMP_RS00245 at 56.194 kb on + strand, within MMP_RS00245 at 56.197 kb on - strand, within MMP_RS00245 at 56.198 kb on + strand, within MMP_RS00245 at 56.202 kb on - strand, within MMP_RS00245 at 56.242 kb on + strand, within MMP_RS00245 at 56.242 kb on + strand, within MMP_RS00245 at 56.266 kb on - strand, within MMP_RS00245 at 56.267 kb on + strand, within MMP_RS00245 at 56.268 kb on - strand, within MMP_RS00245 at 56.272 kb on + strand, within MMP_RS00245 at 56.356 kb on - strand, within MMP_RS00245 at 56.367 kb on - strand, within MMP_RS00245 at 56.374 kb on - strand, within MMP_RS00245 at 56.375 kb on + strand, within MMP_RS00245 at 56.375 kb on + strand, within MMP_RS00245 at 56.377 kb on - strand, within MMP_RS00245 at 56.443 kb on - strand, within MMP_RS00245 at 56.444 kb on + strand, within MMP_RS00245 at 56.461 kb on + strand, within MMP_RS00245 at 56.464 kb on + strand, within MMP_RS00245 at 56.501 kb on + strand, within MMP_RS00245 at 56.576 kb on - strand, within MMP_RS00245 at 56.577 kb on + strand, within MMP_RS00245 at 56.590 kb on - strand, within MMP_RS00245 at 56.591 kb on + strand, within MMP_RS00245 at 56.591 kb on + strand, within MMP_RS00245 at 56.595 kb on - strand, within MMP_RS00245 at 56.620 kb on + strand, within MMP_RS00245 at 56.644 kb on + strand, within MMP_RS00245 at 56.644 kb on + strand, within MMP_RS00245 at 56.651 kb on - strand, within MMP_RS00245 at 56.707 kb on - strand, within MMP_RS00245 at 56.708 kb on + strand, within MMP_RS00245 at 56.716 kb on - strand, within MMP_RS00245 at 56.717 kb on + strand, within MMP_RS00245 at 56.717 kb on + strand, within MMP_RS00245 at 56.725 kb on + strand, within MMP_RS00245 at 56.725 kb on + strand, within MMP_RS00245 at 56.728 kb on - strand, within MMP_RS00245 at 56.749 kb on + strand, within MMP_RS00245 at 56.749 kb on + strand, within MMP_RS00245 at 56.750 kb on - strand, within MMP_RS00245 at 56.751 kb on + strand, within MMP_RS00245 at 56.759 kb on - strand, within MMP_RS00245 at 56.760 kb on + strand, within MMP_RS00245 at 56.760 kb on + strand, within MMP_RS00245 at 56.768 kb on + strand, within MMP_RS00245 at 56.781 kb on - strand, within MMP_RS00245 at 56.781 kb on - strand, within MMP_RS00245 at 56.781 kb on - strand, within MMP_RS00245 at 56.782 kb on + strand, within MMP_RS00245 at 56.785 kb on - strand, within MMP_RS00245 at 56.785 kb on - strand, within MMP_RS00245 at 56.785 kb on - strand, within MMP_RS00245 at 56.785 kb on - strand, within MMP_RS00245 at 56.786 kb on + strand, within MMP_RS00245 at 56.786 kb on + strand, within MMP_RS00245 at 56.786 kb on + strand, within MMP_RS00245 at 56.786 kb on + strand, within MMP_RS00245 at 56.788 kb on + strand, within MMP_RS00245 at 56.822 kb on - strand, within MMP_RS00245 at 56.842 kb on + strand at 56.842 kb on + strand at 56.846 kb on + strand at 56.868 kb on - strand at 56.869 kb on + strand at 56.878 kb on - strand at 56.878 kb on - strand at 56.879 kb on + strand at 56.883 kb on - strand at 56.884 kb on + strand at 56.904 kb on - strand at 56.905 kb on + strand at 56.936 kb on - strand at 56.936 kb on - strand at 56.947 kb on - strand at 56.948 kb on + strand at 56.996 kb on - strand at 56.996 kb on - strand at 56.997 kb on + strand at 57.000 kb on - strand at 57.000 kb on - strand at 57.000 kb on - strand at 57.000 kb on - strand at 57.001 kb on + strand at 57.001 kb on + strand at 57.018 kb on + strand at 57.018 kb on + strand at 57.027 kb on + strand at 57.029 kb on - strand at 57.044 kb on - strand at 57.046 kb on - strand at 57.046 kb on - strand at 57.046 kb on - strand at 57.047 kb on + strand at 57.047 kb on + strand at 57.047 kb on + strand at 57.051 kb on - strand at 57.065 kb on - strand at 57.065 kb on - strand at 57.066 kb on + strand at 57.085 kb on + strand at 57.135 kb on + strand, within MMP_RS00250 at 57.135 kb on + strand, within MMP_RS00250 at 57.197 kb on - strand, within MMP_RS00250 at 57.270 kb on + strand, within MMP_RS00250 at 57.454 kb on + strand, within MMP_RS00250 at 57.603 kb on + strand, within MMP_RS00250 at 57.606 kb on - strand, within MMP_RS00250 at 57.607 kb on + strand, within MMP_RS00250 at 57.621 kb on + strand, within MMP_RS00250 at 57.622 kb on - strand, within MMP_RS00250 at 57.623 kb on + strand, within MMP_RS00250 at 57.623 kb on + strand, within MMP_RS00250 at 57.657 kb on + strand, within MMP_RS00250 at 57.715 kb on - strand, within MMP_RS00250 at 57.813 kb on + strand, within MMP_RS00250 at 57.939 kb on - strand, within MMP_RS00250 at 57.941 kb on - strand, within MMP_RS00250 at 58.107 kb on - strand, within MMP_RS00250 at 58.111 kb on + strand, within MMP_RS00250 at 58.115 kb on + strand, within MMP_RS00250 at 58.121 kb on + strand, within MMP_RS00250 at 58.128 kb on - strand, within MMP_RS00250 at 58.128 kb on - strand, within MMP_RS00250 at 58.143 kb on - strand, within MMP_RS00250 at 58.143 kb on - strand, within MMP_RS00250 at 58.144 kb on + strand, within MMP_RS00250 at 58.220 kb on - strand, within MMP_RS00250 at 58.221 kb on + strand, within MMP_RS00250 at 58.243 kb on + strand, within MMP_RS00250 at 58.243 kb on + strand, within MMP_RS00250 at 58.253 kb on - strand, within MMP_RS00250 at 58.259 kb on - strand, within MMP_RS00250 at 58.313 kb on + strand, within MMP_RS00250 at 58.313 kb on + strand, within MMP_RS00250 at 58.313 kb on + strand, within MMP_RS00250 at 58.315 kb on + strand, within MMP_RS00250 at 58.344 kb on - strand, within MMP_RS00250 at 58.344 kb on - strand, within MMP_RS00250 at 58.378 kb on - strand, within MMP_RS00250 at 58.379 kb on + strand, within MMP_RS00250 at 58.379 kb on + strand, within MMP_RS00250 at 58.389 kb on - strand, within MMP_RS00250 at 58.401 kb on + strand, within MMP_RS00250 at 58.500 kb on - strand at 58.500 kb on - strand at 58.501 kb on + strand at 58.501 kb on + strand at 58.531 kb on + strand at 58.531 kb on + strand at 58.595 kb on - strand at 58.607 kb on + strand at 58.608 kb on - strand at 58.614 kb on - strand at 58.627 kb on + strand at 58.653 kb on + strand at 58.664 kb on - strand at 59.349 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_H2_complete rubidium chloride 125 mM remove 56,151 - MMP_RS00245 0.26 -1.1 56,152 + MMP_RS00245 0.26 -0.9 56,193 - MMP_RS00245 0.30 -1.0 56,194 + MMP_RS00245 0.30 -0.0 56,194 + MMP_RS00245 0.30 -0.6 56,197 - MMP_RS00245 0.30 -0.8 56,198 + MMP_RS00245 0.30 -1.7 56,202 - MMP_RS00245 0.31 -1.2 56,242 + MMP_RS00245 0.35 -0.3 56,242 + MMP_RS00245 0.35 -0.9 56,266 - MMP_RS00245 0.37 -1.5 56,267 + MMP_RS00245 0.37 -0.9 56,268 - MMP_RS00245 0.37 -0.9 56,272 + MMP_RS00245 0.37 -1.8 56,356 - MMP_RS00245 0.45 -1.6 56,367 - MMP_RS00245 0.46 -1.1 56,374 - MMP_RS00245 0.47 -0.7 56,375 + MMP_RS00245 0.47 -0.3 56,375 + MMP_RS00245 0.47 -1.0 56,377 - MMP_RS00245 0.47 -1.1 56,443 - MMP_RS00245 0.54 -0.0 56,444 + MMP_RS00245 0.54 -1.2 56,461 + MMP_RS00245 0.55 -0.8 56,464 + MMP_RS00245 0.56 +0.1 56,501 + MMP_RS00245 0.59 -2.3 56,576 - MMP_RS00245 0.66 -0.4 56,577 + MMP_RS00245 0.66 -0.3 56,590 - MMP_RS00245 0.67 -2.3 56,591 + MMP_RS00245 0.68 -0.2 56,591 + MMP_RS00245 0.68 -0.2 56,595 - MMP_RS00245 0.68 -0.3 56,620 + MMP_RS00245 0.70 -2.9 56,644 + MMP_RS00245 0.73 -1.7 56,644 + MMP_RS00245 0.73 -0.7 56,651 - MMP_RS00245 0.73 -0.8 56,707 - MMP_RS00245 0.78 -1.4 56,708 + MMP_RS00245 0.79 -0.2 56,716 - MMP_RS00245 0.79 -1.5 56,717 + MMP_RS00245 0.79 -0.9 56,717 + MMP_RS00245 0.79 -1.1 56,725 + MMP_RS00245 0.80 +0.1 56,725 + MMP_RS00245 0.80 -1.3 56,728 - MMP_RS00245 0.80 -0.5 56,749 + MMP_RS00245 0.82 -0.2 56,749 + MMP_RS00245 0.82 -0.3 56,750 - MMP_RS00245 0.83 -2.1 56,751 + MMP_RS00245 0.83 -0.8 56,759 - MMP_RS00245 0.83 -0.5 56,760 + MMP_RS00245 0.83 +0.4 56,760 + MMP_RS00245 0.83 -0.8 56,768 + MMP_RS00245 0.84 -0.5 56,781 - MMP_RS00245 0.85 -0.7 56,781 - MMP_RS00245 0.85 -0.6 56,781 - MMP_RS00245 0.85 -0.8 56,782 + MMP_RS00245 0.86 -0.9 56,785 - MMP_RS00245 0.86 -0.5 56,785 - MMP_RS00245 0.86 -3.4 56,785 - MMP_RS00245 0.86 -1.0 56,785 - MMP_RS00245 0.86 -1.3 56,786 + MMP_RS00245 0.86 -0.5 56,786 + MMP_RS00245 0.86 -0.5 56,786 + MMP_RS00245 0.86 -0.9 56,786 + MMP_RS00245 0.86 -0.8 56,788 + MMP_RS00245 0.86 -0.6 56,822 - MMP_RS00245 0.89 -0.5 56,842 + -1.4 56,842 + -0.4 56,846 + -0.7 56,868 - -0.7 56,869 + -0.9 56,878 - -0.9 56,878 - -0.9 56,879 + -0.8 56,883 - -0.9 56,884 + -1.2 56,904 - -0.3 56,905 + -0.3 56,936 - -1.0 56,936 - -0.6 56,947 - -0.4 56,948 + -0.4 56,996 - -1.1 56,996 - -0.5 56,997 + -1.2 57,000 - -1.0 57,000 - -0.6 57,000 - -0.0 57,000 - +0.2 57,001 + -0.9 57,001 + -0.5 57,018 + -0.4 57,018 + -0.9 57,027 + -0.1 57,029 - -0.5 57,044 - -0.3 57,046 - -0.2 57,046 - -2.6 57,046 - -1.1 57,047 + -0.8 57,047 + -0.1 57,047 + -0.7 57,051 - -1.2 57,065 - -1.1 57,065 - -0.6 57,066 + -0.4 57,085 + -0.5 57,135 + MMP_RS00250 0.11 -0.3 57,135 + MMP_RS00250 0.11 -0.4 57,197 - MMP_RS00250 0.15 -0.6 57,270 + MMP_RS00250 0.20 -0.7 57,454 + MMP_RS00250 0.31 -1.7 57,603 + MMP_RS00250 0.40 -0.5 57,606 - MMP_RS00250 0.40 -0.7 57,607 + MMP_RS00250 0.40 -0.7 57,621 + MMP_RS00250 0.41 -0.5 57,622 - MMP_RS00250 0.41 -0.8 57,623 + MMP_RS00250 0.41 -0.4 57,623 + MMP_RS00250 0.41 -0.9 57,657 + MMP_RS00250 0.43 -0.6 57,715 - MMP_RS00250 0.47 -1.5 57,813 + MMP_RS00250 0.53 -1.2 57,939 - MMP_RS00250 0.60 -0.3 57,941 - MMP_RS00250 0.60 -0.9 58,107 - MMP_RS00250 0.70 -0.8 58,111 + MMP_RS00250 0.71 -1.6 58,115 + MMP_RS00250 0.71 -2.8 58,121 + MMP_RS00250 0.71 -1.6 58,128 - MMP_RS00250 0.72 -1.0 58,128 - MMP_RS00250 0.72 -1.8 58,143 - MMP_RS00250 0.73 -0.0 58,143 - MMP_RS00250 0.73 -1.2 58,144 + MMP_RS00250 0.73 -1.1 58,220 - MMP_RS00250 0.77 -0.9 58,221 + MMP_RS00250 0.77 -1.0 58,243 + MMP_RS00250 0.79 -0.6 58,243 + MMP_RS00250 0.79 -0.2 58,253 - MMP_RS00250 0.79 -0.7 58,259 - MMP_RS00250 0.80 -1.9 58,313 + MMP_RS00250 0.83 -0.2 58,313 + MMP_RS00250 0.83 -0.6 58,313 + MMP_RS00250 0.83 -1.7 58,315 + MMP_RS00250 0.83 -0.4 58,344 - MMP_RS00250 0.85 -0.7 58,344 - MMP_RS00250 0.85 -0.4 58,378 - MMP_RS00250 0.87 -1.6 58,379 + MMP_RS00250 0.87 -0.4 58,379 + MMP_RS00250 0.87 -1.2 58,389 - MMP_RS00250 0.87 -0.8 58,401 + MMP_RS00250 0.88 -1.6 58,500 - -1.6 58,500 - -0.8 58,501 + -0.4 58,501 + -1.5 58,531 + -0.8 58,531 + -0.9 58,595 - -0.7 58,607 + -1.5 58,608 - -0.6 58,614 - -1.0 58,627 + -0.3 58,653 + -3.5 58,664 - +0.3 59,349 + -0.4
Or see this region's nucleotide sequence