Experiment: McCas_H2_complete rubidium chloride 125 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS00235 and MMP_RS00240 are separated by 26 nucleotides MMP_RS00240 and MMP_RS00245 are separated by 4 nucleotides MMP_RS00245 and MMP_RS00250 are separated by 11 nucleotides
MMP_RS00235: MMP_RS00235 - HDIG domain-containing protein, at 54,361 to 54,948
_RS00235
MMP_RS00240: MMP_RS00240 - type II secretion system F family protein, at 54,975 to 55,871
_RS00240
MMP_RS00245: MMP_RS00245 - type II secretion system F family protein, at 55,876 to 56,934
_RS00245
MMP_RS00250: MMP_RS00250 - Flp pilus assembly complex ATPase component TadA, at 56,946 to 58,595
_RS00250
Position (kb) 55
56
57 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 54.907 kb on - strand at 54.920 kb on - strand at 54.930 kb on - strand at 54.930 kb on - strand at 54.930 kb on - strand at 54.931 kb on + strand at 54.936 kb on + strand at 54.947 kb on + strand at 54.947 kb on + strand at 54.977 kb on + strand at 54.977 kb on + strand at 54.984 kb on - strand at 54.996 kb on + strand at 55.005 kb on - strand at 55.005 kb on - strand at 55.041 kb on - strand at 55.042 kb on + strand at 55.052 kb on - strand at 55.057 kb on + strand at 55.065 kb on + strand, within MMP_RS00240 at 55.068 kb on - strand, within MMP_RS00240 at 55.150 kb on + strand, within MMP_RS00240 at 55.254 kb on - strand, within MMP_RS00240 at 55.290 kb on - strand, within MMP_RS00240 at 55.369 kb on - strand, within MMP_RS00240 at 55.410 kb on - strand, within MMP_RS00240 at 55.440 kb on - strand, within MMP_RS00240 at 55.440 kb on - strand, within MMP_RS00240 at 55.440 kb on - strand, within MMP_RS00240 at 55.441 kb on + strand, within MMP_RS00240 at 55.441 kb on + strand, within MMP_RS00240 at 55.441 kb on + strand, within MMP_RS00240 at 55.484 kb on - strand, within MMP_RS00240 at 55.504 kb on + strand, within MMP_RS00240 at 55.504 kb on + strand, within MMP_RS00240 at 55.530 kb on - strand, within MMP_RS00240 at 55.531 kb on + strand, within MMP_RS00240 at 55.591 kb on - strand, within MMP_RS00240 at 55.591 kb on - strand, within MMP_RS00240 at 55.592 kb on + strand, within MMP_RS00240 at 55.592 kb on + strand, within MMP_RS00240 at 55.601 kb on - strand, within MMP_RS00240 at 55.607 kb on - strand, within MMP_RS00240 at 55.639 kb on - strand, within MMP_RS00240 at 55.672 kb on + strand, within MMP_RS00240 at 55.678 kb on + strand, within MMP_RS00240 at 55.698 kb on + strand, within MMP_RS00240 at 55.831 kb on + strand at 55.840 kb on - strand at 55.840 kb on - strand at 55.840 kb on - strand at 55.842 kb on - strand at 55.842 kb on - strand at 55.842 kb on - strand at 55.842 kb on - strand at 55.842 kb on - strand at 55.843 kb on + strand at 55.844 kb on - strand at 55.844 kb on - strand at 55.844 kb on - strand at 55.844 kb on - strand at 55.845 kb on + strand at 55.851 kb on - strand at 55.852 kb on + strand at 55.855 kb on - strand at 55.906 kb on + strand at 55.906 kb on + strand at 55.909 kb on - strand at 56.151 kb on - strand, within MMP_RS00245 at 56.152 kb on + strand, within MMP_RS00245 at 56.193 kb on - strand, within MMP_RS00245 at 56.194 kb on + strand, within MMP_RS00245 at 56.194 kb on + strand, within MMP_RS00245 at 56.197 kb on - strand, within MMP_RS00245 at 56.198 kb on + strand, within MMP_RS00245 at 56.202 kb on - strand, within MMP_RS00245 at 56.242 kb on + strand, within MMP_RS00245 at 56.242 kb on + strand, within MMP_RS00245 at 56.266 kb on - strand, within MMP_RS00245 at 56.267 kb on + strand, within MMP_RS00245 at 56.268 kb on - strand, within MMP_RS00245 at 56.272 kb on + strand, within MMP_RS00245 at 56.356 kb on - strand, within MMP_RS00245 at 56.367 kb on - strand, within MMP_RS00245 at 56.374 kb on - strand, within MMP_RS00245 at 56.375 kb on + strand, within MMP_RS00245 at 56.375 kb on + strand, within MMP_RS00245 at 56.377 kb on - strand, within MMP_RS00245 at 56.443 kb on - strand, within MMP_RS00245 at 56.444 kb on + strand, within MMP_RS00245 at 56.461 kb on + strand, within MMP_RS00245 at 56.464 kb on + strand, within MMP_RS00245 at 56.501 kb on + strand, within MMP_RS00245 at 56.576 kb on - strand, within MMP_RS00245 at 56.577 kb on + strand, within MMP_RS00245 at 56.590 kb on - strand, within MMP_RS00245 at 56.591 kb on + strand, within MMP_RS00245 at 56.591 kb on + strand, within MMP_RS00245 at 56.595 kb on - strand, within MMP_RS00245 at 56.620 kb on + strand, within MMP_RS00245 at 56.644 kb on + strand, within MMP_RS00245 at 56.644 kb on + strand, within MMP_RS00245 at 56.651 kb on - strand, within MMP_RS00245 at 56.707 kb on - strand, within MMP_RS00245 at 56.708 kb on + strand, within MMP_RS00245 at 56.716 kb on - strand, within MMP_RS00245 at 56.717 kb on + strand, within MMP_RS00245 at 56.717 kb on + strand, within MMP_RS00245 at 56.725 kb on + strand, within MMP_RS00245 at 56.725 kb on + strand, within MMP_RS00245 at 56.728 kb on - strand, within MMP_RS00245 at 56.749 kb on + strand, within MMP_RS00245 at 56.749 kb on + strand, within MMP_RS00245 at 56.750 kb on - strand, within MMP_RS00245 at 56.751 kb on + strand, within MMP_RS00245 at 56.759 kb on - strand, within MMP_RS00245 at 56.760 kb on + strand, within MMP_RS00245 at 56.760 kb on + strand, within MMP_RS00245 at 56.768 kb on + strand, within MMP_RS00245 at 56.781 kb on - strand, within MMP_RS00245 at 56.781 kb on - strand, within MMP_RS00245 at 56.781 kb on - strand, within MMP_RS00245 at 56.782 kb on + strand, within MMP_RS00245 at 56.785 kb on - strand, within MMP_RS00245 at 56.785 kb on - strand, within MMP_RS00245 at 56.785 kb on - strand, within MMP_RS00245 at 56.785 kb on - strand, within MMP_RS00245 at 56.786 kb on + strand, within MMP_RS00245 at 56.786 kb on + strand, within MMP_RS00245 at 56.786 kb on + strand, within MMP_RS00245 at 56.786 kb on + strand, within MMP_RS00245 at 56.788 kb on + strand, within MMP_RS00245 at 56.822 kb on - strand, within MMP_RS00245 at 56.842 kb on + strand at 56.842 kb on + strand at 56.846 kb on + strand at 56.868 kb on - strand at 56.869 kb on + strand at 56.878 kb on - strand at 56.878 kb on - strand at 56.879 kb on + strand at 56.883 kb on - strand at 56.884 kb on + strand at 56.904 kb on - strand at 56.905 kb on + strand at 56.936 kb on - strand at 56.936 kb on - strand at 56.947 kb on - strand at 56.948 kb on + strand at 56.996 kb on - strand at 56.996 kb on - strand at 56.997 kb on + strand at 57.000 kb on - strand at 57.000 kb on - strand at 57.000 kb on - strand at 57.000 kb on - strand at 57.001 kb on + strand at 57.001 kb on + strand at 57.018 kb on + strand at 57.018 kb on + strand at 57.027 kb on + strand at 57.029 kb on - strand at 57.044 kb on - strand at 57.046 kb on - strand at 57.046 kb on - strand at 57.046 kb on - strand at 57.047 kb on + strand at 57.047 kb on + strand at 57.047 kb on + strand at 57.051 kb on - strand at 57.065 kb on - strand at 57.065 kb on - strand at 57.066 kb on + strand at 57.085 kb on + strand at 57.135 kb on + strand, within MMP_RS00250 at 57.135 kb on + strand, within MMP_RS00250 at 57.197 kb on - strand, within MMP_RS00250 at 57.270 kb on + strand, within MMP_RS00250 at 57.454 kb on + strand, within MMP_RS00250 at 57.603 kb on + strand, within MMP_RS00250 at 57.606 kb on - strand, within MMP_RS00250 at 57.607 kb on + strand, within MMP_RS00250 at 57.621 kb on + strand, within MMP_RS00250 at 57.622 kb on - strand, within MMP_RS00250 at 57.623 kb on + strand, within MMP_RS00250 at 57.623 kb on + strand, within MMP_RS00250 at 57.657 kb on + strand, within MMP_RS00250 at 57.715 kb on - strand, within MMP_RS00250 at 57.813 kb on + strand, within MMP_RS00250
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_H2_complete rubidium chloride 125 mM remove 54,907 - -0.6 54,920 - +0.3 54,930 - +1.1 54,930 - -1.0 54,930 - -0.8 54,931 + -0.6 54,936 + +0.4 54,947 + +1.4 54,947 + +0.3 54,977 + -0.5 54,977 + +0.4 54,984 - +0.4 54,996 + -0.0 55,005 - -0.2 55,005 - -1.6 55,041 - -1.0 55,042 + -0.2 55,052 - -1.6 55,057 + +1.2 55,065 + MMP_RS00240 0.10 -0.4 55,068 - MMP_RS00240 0.10 -1.1 55,150 + MMP_RS00240 0.20 -1.3 55,254 - MMP_RS00240 0.31 -1.2 55,290 - MMP_RS00240 0.35 -1.2 55,369 - MMP_RS00240 0.44 +0.5 55,410 - MMP_RS00240 0.48 -0.6 55,440 - MMP_RS00240 0.52 -1.0 55,440 - MMP_RS00240 0.52 -0.5 55,440 - MMP_RS00240 0.52 -0.9 55,441 + MMP_RS00240 0.52 -1.0 55,441 + MMP_RS00240 0.52 -0.6 55,441 + MMP_RS00240 0.52 -0.6 55,484 - MMP_RS00240 0.57 -0.6 55,504 + MMP_RS00240 0.59 -0.2 55,504 + MMP_RS00240 0.59 +0.1 55,530 - MMP_RS00240 0.62 -0.6 55,531 + MMP_RS00240 0.62 -0.5 55,591 - MMP_RS00240 0.69 -0.2 55,591 - MMP_RS00240 0.69 -1.1 55,592 + MMP_RS00240 0.69 -1.4 55,592 + MMP_RS00240 0.69 -0.4 55,601 - MMP_RS00240 0.70 -1.5 55,607 - MMP_RS00240 0.70 -0.4 55,639 - MMP_RS00240 0.74 -0.7 55,672 + MMP_RS00240 0.78 -0.7 55,678 + MMP_RS00240 0.78 -1.7 55,698 + MMP_RS00240 0.81 +0.9 55,831 + -1.1 55,840 - -1.1 55,840 - -0.6 55,840 - -0.6 55,842 - -1.3 55,842 - -0.9 55,842 - -1.2 55,842 - -0.8 55,842 - -0.9 55,843 + -1.1 55,844 - -0.6 55,844 - -1.4 55,844 - -1.1 55,844 - -1.3 55,845 + -0.9 55,851 - -2.0 55,852 + -0.6 55,855 - +2.0 55,906 + -0.8 55,906 + -0.5 55,909 - -0.8 56,151 - MMP_RS00245 0.26 -1.1 56,152 + MMP_RS00245 0.26 -0.9 56,193 - MMP_RS00245 0.30 -1.0 56,194 + MMP_RS00245 0.30 -0.0 56,194 + MMP_RS00245 0.30 -0.6 56,197 - MMP_RS00245 0.30 -0.8 56,198 + MMP_RS00245 0.30 -1.7 56,202 - MMP_RS00245 0.31 -1.2 56,242 + MMP_RS00245 0.35 -0.3 56,242 + MMP_RS00245 0.35 -0.9 56,266 - MMP_RS00245 0.37 -1.5 56,267 + MMP_RS00245 0.37 -0.9 56,268 - MMP_RS00245 0.37 -0.9 56,272 + MMP_RS00245 0.37 -1.8 56,356 - MMP_RS00245 0.45 -1.6 56,367 - MMP_RS00245 0.46 -1.1 56,374 - MMP_RS00245 0.47 -0.7 56,375 + MMP_RS00245 0.47 -0.3 56,375 + MMP_RS00245 0.47 -1.0 56,377 - MMP_RS00245 0.47 -1.1 56,443 - MMP_RS00245 0.54 -0.0 56,444 + MMP_RS00245 0.54 -1.2 56,461 + MMP_RS00245 0.55 -0.8 56,464 + MMP_RS00245 0.56 +0.1 56,501 + MMP_RS00245 0.59 -2.3 56,576 - MMP_RS00245 0.66 -0.4 56,577 + MMP_RS00245 0.66 -0.3 56,590 - MMP_RS00245 0.67 -2.3 56,591 + MMP_RS00245 0.68 -0.2 56,591 + MMP_RS00245 0.68 -0.2 56,595 - MMP_RS00245 0.68 -0.3 56,620 + MMP_RS00245 0.70 -2.9 56,644 + MMP_RS00245 0.73 -1.7 56,644 + MMP_RS00245 0.73 -0.7 56,651 - MMP_RS00245 0.73 -0.8 56,707 - MMP_RS00245 0.78 -1.4 56,708 + MMP_RS00245 0.79 -0.2 56,716 - MMP_RS00245 0.79 -1.5 56,717 + MMP_RS00245 0.79 -0.9 56,717 + MMP_RS00245 0.79 -1.1 56,725 + MMP_RS00245 0.80 +0.1 56,725 + MMP_RS00245 0.80 -1.3 56,728 - MMP_RS00245 0.80 -0.5 56,749 + MMP_RS00245 0.82 -0.2 56,749 + MMP_RS00245 0.82 -0.3 56,750 - MMP_RS00245 0.83 -2.1 56,751 + MMP_RS00245 0.83 -0.8 56,759 - MMP_RS00245 0.83 -0.5 56,760 + MMP_RS00245 0.83 +0.4 56,760 + MMP_RS00245 0.83 -0.8 56,768 + MMP_RS00245 0.84 -0.5 56,781 - MMP_RS00245 0.85 -0.7 56,781 - MMP_RS00245 0.85 -0.6 56,781 - MMP_RS00245 0.85 -0.8 56,782 + MMP_RS00245 0.86 -0.9 56,785 - MMP_RS00245 0.86 -0.5 56,785 - MMP_RS00245 0.86 -3.4 56,785 - MMP_RS00245 0.86 -1.0 56,785 - MMP_RS00245 0.86 -1.3 56,786 + MMP_RS00245 0.86 -0.5 56,786 + MMP_RS00245 0.86 -0.5 56,786 + MMP_RS00245 0.86 -0.9 56,786 + MMP_RS00245 0.86 -0.8 56,788 + MMP_RS00245 0.86 -0.6 56,822 - MMP_RS00245 0.89 -0.5 56,842 + -1.4 56,842 + -0.4 56,846 + -0.7 56,868 - -0.7 56,869 + -0.9 56,878 - -0.9 56,878 - -0.9 56,879 + -0.8 56,883 - -0.9 56,884 + -1.2 56,904 - -0.3 56,905 + -0.3 56,936 - -1.0 56,936 - -0.6 56,947 - -0.4 56,948 + -0.4 56,996 - -1.1 56,996 - -0.5 56,997 + -1.2 57,000 - -1.0 57,000 - -0.6 57,000 - -0.0 57,000 - +0.2 57,001 + -0.9 57,001 + -0.5 57,018 + -0.4 57,018 + -0.9 57,027 + -0.1 57,029 - -0.5 57,044 - -0.3 57,046 - -0.2 57,046 - -2.6 57,046 - -1.1 57,047 + -0.8 57,047 + -0.1 57,047 + -0.7 57,051 - -1.2 57,065 - -1.1 57,065 - -0.6 57,066 + -0.4 57,085 + -0.5 57,135 + MMP_RS00250 0.11 -0.3 57,135 + MMP_RS00250 0.11 -0.4 57,197 - MMP_RS00250 0.15 -0.6 57,270 + MMP_RS00250 0.20 -0.7 57,454 + MMP_RS00250 0.31 -1.7 57,603 + MMP_RS00250 0.40 -0.5 57,606 - MMP_RS00250 0.40 -0.7 57,607 + MMP_RS00250 0.40 -0.7 57,621 + MMP_RS00250 0.41 -0.5 57,622 - MMP_RS00250 0.41 -0.8 57,623 + MMP_RS00250 0.41 -0.4 57,623 + MMP_RS00250 0.41 -0.9 57,657 + MMP_RS00250 0.43 -0.6 57,715 - MMP_RS00250 0.47 -1.5 57,813 + MMP_RS00250 0.53 -1.2
Or see this region's nucleotide sequence