Experiment: McCas_H2_complete Zinc Pyrithione 0.0142857142857143 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS01825 and MMP_RS01830 are separated by 105 nucleotides MMP_RS01830 and MMP_RS01835 are separated by 110 nucleotides MMP_RS01835 and MMP_RS01840 are separated by 0 nucleotides MMP_RS01840 and MMP_RS01845 are separated by 52 nucleotides
MMP_RS01825: MMP_RS01825 - acetyl-CoA carboxylase biotin carboxylase subunit, at 337,634 to 339,139
_RS01825
MMP_RS01830: MMP_RS01830 - tRNA-Val, at 339,245 to 339,321
_RS01830
MMP_RS01835: MMP_RS01835 - hypothetical protein, at 339,432 to 339,866
_RS01835
MMP_RS01840: MMP_RS01840 - TIGR00289 family protein, at 339,867 to 340,538
_RS01840
MMP_RS01845: MMP_RS01845 - hypothetical protein, at 340,591 to 341,472
_RS01845
Position (kb) 339
340
341 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1
2 at 338.887 kb on + strand at 338.949 kb on + strand at 338.959 kb on - strand at 339.094 kb on + strand at 339.122 kb on + strand at 339.152 kb on + strand at 339.155 kb on - strand at 339.160 kb on - strand at 339.160 kb on - strand at 339.166 kb on - strand at 339.166 kb on - strand at 339.206 kb on + strand at 339.215 kb on + strand at 339.224 kb on + strand at 339.234 kb on + strand at 339.240 kb on - strand at 339.257 kb on - strand, within MMP_RS01830 at 339.258 kb on + strand, within MMP_RS01830 at 339.451 kb on + strand at 339.530 kb on - strand, within MMP_RS01835 at 339.535 kb on - strand, within MMP_RS01835 at 339.558 kb on - strand, within MMP_RS01835 at 339.635 kb on - strand, within MMP_RS01835 at 339.635 kb on - strand, within MMP_RS01835 at 339.636 kb on + strand, within MMP_RS01835 at 339.736 kb on + strand, within MMP_RS01835 at 339.737 kb on - strand, within MMP_RS01835 at 339.763 kb on - strand, within MMP_RS01835 at 339.765 kb on - strand, within MMP_RS01835 at 339.812 kb on + strand, within MMP_RS01835 at 339.865 kb on + strand at 339.899 kb on - strand at 339.942 kb on - strand, within MMP_RS01840 at 339.951 kb on - strand, within MMP_RS01840 at 340.266 kb on - strand, within MMP_RS01840 at 340.267 kb on + strand, within MMP_RS01840 at 340.338 kb on + strand, within MMP_RS01840 at 340.340 kb on - strand, within MMP_RS01840 at 340.345 kb on + strand, within MMP_RS01840 at 340.417 kb on - strand, within MMP_RS01840 at 340.453 kb on - strand, within MMP_RS01840 at 340.453 kb on - strand, within MMP_RS01840 at 340.453 kb on - strand, within MMP_RS01840 at 340.454 kb on + strand, within MMP_RS01840 at 340.454 kb on + strand, within MMP_RS01840 at 340.708 kb on - strand, within MMP_RS01845 at 340.711 kb on + strand, within MMP_RS01845 at 340.714 kb on + strand, within MMP_RS01845 at 340.726 kb on - strand, within MMP_RS01845 at 340.763 kb on - strand, within MMP_RS01845 at 340.763 kb on - strand, within MMP_RS01845 at 340.769 kb on - strand, within MMP_RS01845 at 340.769 kb on - strand, within MMP_RS01845 at 340.774 kb on + strand, within MMP_RS01845 at 340.781 kb on - strand, within MMP_RS01845 at 340.790 kb on - strand, within MMP_RS01845 at 340.791 kb on + strand, within MMP_RS01845 at 340.848 kb on - strand, within MMP_RS01845 at 340.888 kb on - strand, within MMP_RS01845 at 340.888 kb on - strand, within MMP_RS01845 at 340.888 kb on - strand, within MMP_RS01845 at 340.889 kb on + strand, within MMP_RS01845 at 340.918 kb on - strand, within MMP_RS01845 at 341.012 kb on - strand, within MMP_RS01845 at 341.044 kb on + strand, within MMP_RS01845 at 341.070 kb on - strand, within MMP_RS01845 at 341.132 kb on + strand, within MMP_RS01845 at 341.133 kb on - strand, within MMP_RS01845 at 341.139 kb on - strand, within MMP_RS01845 at 341.140 kb on + strand, within MMP_RS01845 at 341.140 kb on + strand, within MMP_RS01845 at 341.140 kb on + strand, within MMP_RS01845 at 341.142 kb on + strand, within MMP_RS01845 at 341.181 kb on + strand, within MMP_RS01845 at 341.218 kb on - strand, within MMP_RS01845 at 341.219 kb on + strand, within MMP_RS01845 at 341.221 kb on + strand, within MMP_RS01845 at 341.249 kb on + strand, within MMP_RS01845 at 341.330 kb on - strand, within MMP_RS01845 at 341.330 kb on - strand, within MMP_RS01845 at 341.472 kb on - strand at 341.472 kb on - strand at 341.475 kb on - strand at 341.475 kb on - strand at 341.476 kb on + strand at 341.476 kb on + strand at 341.476 kb on + strand at 341.476 kb on + strand at 341.501 kb on - strand at 341.501 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_H2_complete Zinc Pyrithione 0.0142857142857143 mM remove 338,887 + -4.0 338,949 + -0.9 338,959 - -1.1 339,094 + -0.3 339,122 + +1.1 339,152 + +2.1 339,155 - -2.8 339,160 - -0.3 339,160 - -0.7 339,166 - +2.5 339,166 - +0.2 339,206 + +0.6 339,215 + +0.5 339,224 + -0.9 339,234 + -1.1 339,240 - -1.7 339,257 - MMP_RS01830 0.16 -1.1 339,258 + MMP_RS01830 0.17 -0.3 339,451 + +0.0 339,530 - MMP_RS01835 0.23 +0.1 339,535 - MMP_RS01835 0.24 +1.6 339,558 - MMP_RS01835 0.29 +1.0 339,635 - MMP_RS01835 0.47 -0.2 339,635 - MMP_RS01835 0.47 +1.3 339,636 + MMP_RS01835 0.47 -0.1 339,736 + MMP_RS01835 0.70 -0.6 339,737 - MMP_RS01835 0.70 -1.7 339,763 - MMP_RS01835 0.76 +1.4 339,765 - MMP_RS01835 0.77 -0.9 339,812 + MMP_RS01835 0.87 +1.5 339,865 + +1.2 339,899 - -0.1 339,942 - MMP_RS01840 0.11 -0.1 339,951 - MMP_RS01840 0.12 -1.4 340,266 - MMP_RS01840 0.59 -0.5 340,267 + MMP_RS01840 0.60 -6.0 340,338 + MMP_RS01840 0.70 -0.9 340,340 - MMP_RS01840 0.70 -1.9 340,345 + MMP_RS01840 0.71 -0.7 340,417 - MMP_RS01840 0.82 -5.1 340,453 - MMP_RS01840 0.87 -1.1 340,453 - MMP_RS01840 0.87 -0.7 340,453 - MMP_RS01840 0.87 -1.8 340,454 + MMP_RS01840 0.87 -3.2 340,454 + MMP_RS01840 0.87 -0.7 340,708 - MMP_RS01845 0.13 +1.1 340,711 + MMP_RS01845 0.14 +0.7 340,714 + MMP_RS01845 0.14 +1.0 340,726 - MMP_RS01845 0.15 +0.9 340,763 - MMP_RS01845 0.20 -0.0 340,763 - MMP_RS01845 0.20 +2.3 340,769 - MMP_RS01845 0.20 +1.3 340,769 - MMP_RS01845 0.20 +0.4 340,774 + MMP_RS01845 0.21 +0.2 340,781 - MMP_RS01845 0.22 -1.5 340,790 - MMP_RS01845 0.23 +0.8 340,791 + MMP_RS01845 0.23 +0.2 340,848 - MMP_RS01845 0.29 +1.6 340,888 - MMP_RS01845 0.34 -2.6 340,888 - MMP_RS01845 0.34 +1.8 340,888 - MMP_RS01845 0.34 -0.8 340,889 + MMP_RS01845 0.34 -1.6 340,918 - MMP_RS01845 0.37 +1.9 341,012 - MMP_RS01845 0.48 +0.7 341,044 + MMP_RS01845 0.51 +0.9 341,070 - MMP_RS01845 0.54 +1.4 341,132 + MMP_RS01845 0.61 +1.2 341,133 - MMP_RS01845 0.61 +0.6 341,139 - MMP_RS01845 0.62 +1.1 341,140 + MMP_RS01845 0.62 +0.7 341,140 + MMP_RS01845 0.62 +1.2 341,140 + MMP_RS01845 0.62 +0.6 341,142 + MMP_RS01845 0.62 -2.2 341,181 + MMP_RS01845 0.67 +0.5 341,218 - MMP_RS01845 0.71 -2.2 341,219 + MMP_RS01845 0.71 -1.0 341,221 + MMP_RS01845 0.71 +0.7 341,249 + MMP_RS01845 0.75 -0.6 341,330 - MMP_RS01845 0.84 +1.6 341,330 - MMP_RS01845 0.84 +1.6 341,472 - +0.8 341,472 - -0.7 341,475 - +0.9 341,475 - -0.2 341,476 + -1.5 341,476 + +1.4 341,476 + +1.0 341,476 + -1.4 341,501 - -0.2 341,501 - +1.0
Or see this region's nucleotide sequence