Experiment: McCas_H2_complete Antimycin A 0.01 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS02640 and MMP_RS02645 are separated by 131 nucleotides MMP_RS02645 and MMP_RS08945 are separated by 112 nucleotides MMP_RS08945 and MMP_RS02650 are separated by 38 nucleotides MMP_RS02650 and MMP_RS02655 are separated by 145 nucleotides
MMP_RS02640: MMP_RS02640 - DUF6198 family protein, at 502,095 to 502,658
_RS02640
MMP_RS02645: MMP_RS02645 - ArsR family transcriptional regulator, at 502,790 to 503,530
_RS02645
MMP_RS08945: MMP_RS08945 - hypothetical protein, at 503,643 to 503,786
_RS08945
MMP_RS02650: MMP_RS02650 - flavodoxin family protein, at 503,825 to 504,376
_RS02650
MMP_RS02655: MMP_RS02655 - terpene cyclase/mutase family protein, at 504,522 to 506,024
_RS02655
Position (kb) 503
504 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3 at 502.759 kb on - strand at 502.766 kb on - strand at 502.766 kb on - strand at 502.767 kb on + strand at 502.771 kb on - strand at 502.771 kb on - strand at 502.806 kb on - strand at 502.829 kb on - strand at 502.850 kb on + strand at 502.995 kb on + strand, within MMP_RS02645 at 503.067 kb on + strand, within MMP_RS02645 at 503.215 kb on - strand, within MMP_RS02645 at 503.219 kb on - strand, within MMP_RS02645 at 503.252 kb on - strand, within MMP_RS02645 at 503.282 kb on - strand, within MMP_RS02645 at 503.295 kb on - strand, within MMP_RS02645 at 503.332 kb on - strand, within MMP_RS02645 at 503.372 kb on + strand, within MMP_RS02645 at 503.408 kb on - strand, within MMP_RS02645 at 503.409 kb on + strand, within MMP_RS02645 at 503.411 kb on + strand, within MMP_RS02645 at 503.535 kb on + strand at 503.546 kb on + strand at 503.553 kb on - strand at 503.556 kb on + strand at 503.562 kb on - strand at 503.563 kb on + strand at 503.612 kb on - strand at 503.613 kb on + strand at 503.633 kb on + strand at 503.640 kb on + strand at 503.642 kb on - strand at 503.643 kb on + strand at 503.673 kb on + strand, within MMP_RS08945 at 503.673 kb on + strand, within MMP_RS08945 at 503.714 kb on + strand, within MMP_RS08945 at 503.720 kb on - strand, within MMP_RS08945 at 503.720 kb on - strand, within MMP_RS08945 at 503.721 kb on + strand, within MMP_RS08945 at 503.721 kb on + strand, within MMP_RS08945 at 503.732 kb on - strand, within MMP_RS08945 at 503.732 kb on - strand, within MMP_RS08945 at 503.732 kb on - strand, within MMP_RS08945 at 503.733 kb on + strand, within MMP_RS08945 at 503.733 kb on + strand, within MMP_RS08945 at 503.733 kb on + strand, within MMP_RS08945 at 503.734 kb on - strand, within MMP_RS08945 at 503.734 kb on - strand, within MMP_RS08945 at 503.735 kb on + strand, within MMP_RS08945 at 503.735 kb on + strand, within MMP_RS08945 at 503.735 kb on + strand, within MMP_RS08945 at 503.759 kb on - strand, within MMP_RS08945 at 503.778 kb on + strand at 503.785 kb on + strand at 503.785 kb on + strand at 503.812 kb on + strand at 503.812 kb on + strand at 503.833 kb on - strand at 503.928 kb on - strand, within MMP_RS02650 at 503.929 kb on + strand, within MMP_RS02650 at 503.954 kb on + strand, within MMP_RS02650 at 503.954 kb on + strand, within MMP_RS02650 at 503.983 kb on - strand, within MMP_RS02650 at 504.017 kb on + strand, within MMP_RS02650 at 504.125 kb on - strand, within MMP_RS02650 at 504.132 kb on - strand, within MMP_RS02650 at 504.186 kb on + strand, within MMP_RS02650 at 504.224 kb on - strand, within MMP_RS02650 at 504.225 kb on + strand, within MMP_RS02650 at 504.264 kb on - strand, within MMP_RS02650 at 504.424 kb on - strand at 504.425 kb on + strand at 504.427 kb on + strand at 504.457 kb on + strand at 504.506 kb on - strand at 504.528 kb on + strand at 504.568 kb on - strand at 504.568 kb on - strand at 504.569 kb on + strand at 504.569 kb on + strand at 504.569 kb on + strand at 504.572 kb on - strand at 504.725 kb on + strand, within MMP_RS02655 at 504.746 kb on + strand, within MMP_RS02655
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_H2_complete Antimycin A 0.01 mM remove 502,759 - +0.4 502,766 - +0.6 502,766 - +0.7 502,767 + +0.2 502,771 - +0.8 502,771 - +0.7 502,806 - +0.3 502,829 - +0.4 502,850 + +2.9 502,995 + MMP_RS02645 0.28 -0.1 503,067 + MMP_RS02645 0.37 +2.0 503,215 - MMP_RS02645 0.57 -0.1 503,219 - MMP_RS02645 0.58 +0.5 503,252 - MMP_RS02645 0.62 +0.6 503,282 - MMP_RS02645 0.66 -0.3 503,295 - MMP_RS02645 0.68 +1.2 503,332 - MMP_RS02645 0.73 -0.6 503,372 + MMP_RS02645 0.79 -0.9 503,408 - MMP_RS02645 0.83 +0.3 503,409 + MMP_RS02645 0.84 +1.2 503,411 + MMP_RS02645 0.84 +1.2 503,535 + +0.3 503,546 + +0.2 503,553 - +0.3 503,556 + +1.3 503,562 - +0.6 503,563 + +1.1 503,612 - +0.8 503,613 + +0.5 503,633 + +1.3 503,640 + +0.8 503,642 - -1.8 503,643 + +0.3 503,673 + MMP_RS08945 0.21 +0.0 503,673 + MMP_RS08945 0.21 -0.3 503,714 + MMP_RS08945 0.49 +0.1 503,720 - MMP_RS08945 0.53 +0.6 503,720 - MMP_RS08945 0.53 +1.2 503,721 + MMP_RS08945 0.54 -0.1 503,721 + MMP_RS08945 0.54 +1.1 503,732 - MMP_RS08945 0.62 +0.8 503,732 - MMP_RS08945 0.62 +0.4 503,732 - MMP_RS08945 0.62 +1.4 503,733 + MMP_RS08945 0.62 +0.0 503,733 + MMP_RS08945 0.62 +0.1 503,733 + MMP_RS08945 0.62 -0.6 503,734 - MMP_RS08945 0.63 +0.7 503,734 - MMP_RS08945 0.63 -1.1 503,735 + MMP_RS08945 0.64 +0.4 503,735 + MMP_RS08945 0.64 +1.1 503,735 + MMP_RS08945 0.64 +1.0 503,759 - MMP_RS08945 0.81 -0.3 503,778 + +0.4 503,785 + +1.0 503,785 + +0.6 503,812 + +0.2 503,812 + +2.3 503,833 - +0.8 503,928 - MMP_RS02650 0.19 -5.0 503,929 + MMP_RS02650 0.19 +0.7 503,954 + MMP_RS02650 0.23 +0.1 503,954 + MMP_RS02650 0.23 +0.4 503,983 - MMP_RS02650 0.29 +0.4 504,017 + MMP_RS02650 0.35 +1.3 504,125 - MMP_RS02650 0.54 +0.7 504,132 - MMP_RS02650 0.56 -0.2 504,186 + MMP_RS02650 0.65 -3.5 504,224 - MMP_RS02650 0.72 -1.0 504,225 + MMP_RS02650 0.72 +0.6 504,264 - MMP_RS02650 0.80 -0.3 504,424 - +1.0 504,425 + +1.0 504,427 + +1.0 504,457 + +0.8 504,506 - +1.7 504,528 + -0.1 504,568 - +1.1 504,568 - +1.2 504,569 + -0.0 504,569 + -1.2 504,569 + +0.6 504,572 - -0.1 504,725 + MMP_RS02655 0.14 +0.1 504,746 + MMP_RS02655 0.15 +1.0
Or see this region's nucleotide sequence