Experiment: McCas_H2_complete Antimycin A 0.01 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS07935 and MMP_RS07940 are separated by 21 nucleotides MMP_RS07940 and MMP_RS07945 are separated by 40 nucleotides MMP_RS07945 and MMP_RS07950 are separated by 38 nucleotides MMP_RS07950 and MMP_RS07955 are separated by 86 nucleotides
MMP_RS07935: MMP_RS07935 - 50S ribosomal protein L4, at 1,499,911 to 1,500,669
_RS07935
MMP_RS07940: MMP_RS07940 - 50S ribosomal protein L23, at 1,500,691 to 1,500,951
_RS07940
MMP_RS07945: MMP_RS07945 - 50S ribosomal protein L2, at 1,500,992 to 1,501,714
_RS07945
MMP_RS07950: MMP_RS07950 - 30S ribosomal protein S19, at 1,501,753 to 1,502,238
_RS07950
MMP_RS07955: MMP_RS07955 - FumA C-terminus/TtdB family hydratase beta subunit, at 1,502,325 to 1,502,897
_RS07955
Position (kb) 1500
1501
1502 Strain fitness (log2 ratio) -1
0
1 at 1502.379 kb on + strand at 1502.385 kb on - strand, within MMP_RS07955 at 1502.386 kb on + strand, within MMP_RS07955 at 1502.386 kb on + strand, within MMP_RS07955 at 1502.390 kb on - strand, within MMP_RS07955 at 1502.483 kb on + strand, within MMP_RS07955 at 1502.622 kb on + strand, within MMP_RS07955 at 1502.635 kb on + strand, within MMP_RS07955
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_H2_complete Antimycin A 0.01 mM remove 1,502,379 + +1.2 1,502,385 - MMP_RS07955 0.10 -0.9 1,502,386 + MMP_RS07955 0.11 -0.6 1,502,386 + MMP_RS07955 0.11 -0.9 1,502,390 - MMP_RS07955 0.11 +0.1 1,502,483 + MMP_RS07955 0.28 +0.7 1,502,622 + MMP_RS07955 0.52 -1.2 1,502,635 + MMP_RS07955 0.54 -1.0
Or see this region's nucleotide sequence