Experiment: McCas_H2_complete Antimycin A 0.01 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS07920 and MMP_RS07925 are separated by 60 nucleotides MMP_RS07925 and MMP_RS07930 are separated by 268 nucleotides MMP_RS07930 and MMP_RS07935 are separated by 30 nucleotides MMP_RS07935 and MMP_RS07940 are separated by 21 nucleotides
MMP_RS07920: MMP_RS07920 - tRNA-Ile, at 1,497,882 to 1,497,956
_RS07920
MMP_RS07925: MMP_RS07925 - haloacid dehalogenase, at 1,498,017 to 1,498,607
_RS07925
MMP_RS07930: MMP_RS07930 - 50S ribosomal protein L3, at 1,498,876 to 1,499,880
_RS07930
MMP_RS07935: MMP_RS07935 - 50S ribosomal protein L4, at 1,499,911 to 1,500,669
_RS07935
MMP_RS07940: MMP_RS07940 - 50S ribosomal protein L23, at 1,500,691 to 1,500,951
_RS07940
Position (kb)
1498
1499
1500 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1498.074 kb on - strand at 1498.075 kb on + strand at 1498.075 kb on + strand at 1498.141 kb on + strand, within MMP_RS07925 at 1498.188 kb on + strand, within MMP_RS07925 at 1498.299 kb on - strand, within MMP_RS07925 at 1498.300 kb on + strand, within MMP_RS07925 at 1498.355 kb on + strand, within MMP_RS07925 at 1498.639 kb on - strand at 1498.669 kb on + strand at 1498.704 kb on - strand at 1499.007 kb on + strand at 1499.096 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_H2_complete Antimycin A 0.01 mM remove 1,498,074 - +0.4 1,498,075 + +1.7 1,498,075 + +0.3 1,498,141 + MMP_RS07925 0.21 +2.7 1,498,188 + MMP_RS07925 0.29 -0.5 1,498,299 - MMP_RS07925 0.48 +1.7 1,498,300 + MMP_RS07925 0.48 +0.7 1,498,355 + MMP_RS07925 0.57 +1.5 1,498,639 - +0.9 1,498,669 + +1.3 1,498,704 - -3.4 1,499,007 + -3.0 1,499,096 - -1.4
Or see this region's nucleotide sequence