Experiment: McCas_H2_complete Antimycin A 0.01 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS07305 and MMP_RS07310 are separated by 14 nucleotides MMP_RS07310 and MMP_RS07320 are separated by 227 nucleotides MMP_RS07320 and MMP_RS07325 are separated by 39 nucleotides
MMP_RS07305: MMP_RS07305 - 50S ribosomal protein L30, at 1,392,104 to 1,392,568
_RS07305
MMP_RS07310: MMP_RS07310 - 50S ribosomal protein L15, at 1,392,583 to 1,393,014
_RS07310
MMP_RS07320: MMP_RS07320 - preprotein translocase subunit SecY, at 1,393,242 to 1,394,570
_RS07320
MMP_RS07325: MMP_RS07325 - glycosyl transferase, at 1,394,610 to 1,395,509
_RS07325
Position (kb)
1393
1394
1395 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1 at 1392.436 kb on + strand at 1393.095 kb on - strand at 1393.175 kb on + strand at 1393.271 kb on - strand at 1393.363 kb on + strand at 1393.915 kb on - strand at 1394.152 kb on + strand at 1394.234 kb on + strand at 1394.502 kb on - strand at 1394.582 kb on - strand at 1394.644 kb on + strand at 1394.692 kb on + strand at 1394.702 kb on + strand at 1394.799 kb on - strand at 1394.985 kb on - strand at 1394.986 kb on + strand at 1395.039 kb on + strand at 1395.421 kb on - strand at 1395.490 kb on + strand at 1395.523 kb on + strand at 1395.523 kb on + strand at 1395.523 kb on + strand at 1395.528 kb on + strand at 1395.554 kb on - strand at 1395.555 kb on + strand at 1395.558 kb on - strand at 1395.558 kb on - strand at 1395.559 kb on + strand at 1395.560 kb on - strand at 1395.561 kb on + strand at 1395.561 kb on + strand at 1395.561 kb on + strand at 1395.561 kb on + strand at 1395.563 kb on + strand at 1395.564 kb on - strand at 1395.564 kb on - strand at 1395.564 kb on - strand at 1395.565 kb on + strand at 1395.565 kb on + strand at 1395.565 kb on + strand at 1395.565 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_H2_complete Antimycin A 0.01 mM remove 1,392,436 + -2.5 1,393,095 - -3.8 1,393,175 + -1.7 1,393,271 - -0.9 1,393,363 + -3.0 1,393,915 - -0.8 1,394,152 + -1.5 1,394,234 + -3.3 1,394,502 - -4.2 1,394,582 - +0.3 1,394,644 + -3.6 1,394,692 + -2.3 1,394,702 + -3.6 1,394,799 - -4.2 1,394,985 - -1.6 1,394,986 + -0.7 1,395,039 + -1.6 1,395,421 - -2.2 1,395,490 + -3.5 1,395,523 + -5.2 1,395,523 + -3.9 1,395,523 + -0.5 1,395,528 + -2.7 1,395,554 - -1.9 1,395,555 + -0.3 1,395,558 - -1.3 1,395,558 - -0.3 1,395,559 + +0.7 1,395,560 - -0.8 1,395,561 + +1.1 1,395,561 + -1.3 1,395,561 + +0.2 1,395,561 + -1.2 1,395,563 + -4.7 1,395,564 - -5.6 1,395,564 - -2.3 1,395,564 - -1.4 1,395,565 + -0.1 1,395,565 + +0.4 1,395,565 + -0.3 1,395,565 + -0.2
Or see this region's nucleotide sequence