Strain Fitness in Methanococcus maripaludis S2 around MMP_RS07310

Experiment: McCas_H2_complete Antimycin A 0.01 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS07300 and MMP_RS07305 are separated by 31 nucleotidesMMP_RS07305 and MMP_RS07310 are separated by 14 nucleotidesMMP_RS07310 and MMP_RS07320 are separated by 227 nucleotides MMP_RS07300: MMP_RS07300 - 30S ribosomal protein S5, at 1,391,395 to 1,392,072 _RS07300 MMP_RS07305: MMP_RS07305 - 50S ribosomal protein L30, at 1,392,104 to 1,392,568 _RS07305 MMP_RS07310: MMP_RS07310 - 50S ribosomal protein L15, at 1,392,583 to 1,393,014 _RS07310 MMP_RS07320: MMP_RS07320 - preprotein translocase subunit SecY, at 1,393,242 to 1,394,570 _RS07320 Position (kb) 1392 1393 1394Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1392.205 kb on - strandat 1392.436 kb on + strandat 1393.095 kb on - strandat 1393.175 kb on + strandat 1393.271 kb on - strandat 1393.363 kb on + strandat 1393.915 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction McCas_H2_complete Antimycin A 0.01 mM
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1,392,205 - -1.9
1,392,436 + -2.5
1,393,095 - -3.8
1,393,175 + -1.7
1,393,271 - -0.9
1,393,363 + -3.0
1,393,915 - -0.8

Or see this region's nucleotide sequence