Experiment: McCas_H2_complete Antimycin A 0.01 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS08915 and MMP_RS06960 are separated by 27 nucleotides MMP_RS06960 and MMP_RS06965 are separated by 16 nucleotides
MMP_RS08915: MMP_RS08915 - 2 5-diamino-6-(ribosylamino)-4(3H)-pyrimidinone 5'-phosphate reductase, at 1,327,842 to 1,328,924
_RS08915
MMP_RS06960: MMP_RS06960 - NAD+ synthase, at 1,328,952 to 1,329,728
_RS06960
MMP_RS06965: MMP_RS06965 - TIGR04014 family B12-binding domain/radical SAM domain-containing protein, at 1,329,745 to 1,331,058
_RS06965
Position (kb)
1328
1329
1330 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 1327.961 kb on + strand, within MMP_RS08915 at 1328.272 kb on + strand, within MMP_RS08915 at 1328.499 kb on + strand, within MMP_RS08915 at 1328.524 kb on + strand, within MMP_RS08915 at 1328.627 kb on - strand, within MMP_RS08915 at 1328.664 kb on - strand, within MMP_RS08915 at 1328.677 kb on - strand, within MMP_RS08915 at 1329.051 kb on + strand at 1329.290 kb on + strand at 1329.347 kb on + strand at 1329.349 kb on - strand at 1329.352 kb on + strand at 1329.546 kb on - strand at 1329.735 kb on + strand at 1329.768 kb on - strand at 1329.768 kb on - strand at 1329.768 kb on - strand at 1329.796 kb on + strand at 1329.849 kb on - strand at 1329.923 kb on + strand, within MMP_RS06965 at 1329.930 kb on + strand, within MMP_RS06965 at 1330.037 kb on + strand, within MMP_RS06965 at 1330.068 kb on - strand, within MMP_RS06965 at 1330.283 kb on + strand, within MMP_RS06965 at 1330.346 kb on + strand, within MMP_RS06965 at 1330.348 kb on + strand, within MMP_RS06965
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_H2_complete Antimycin A 0.01 mM remove 1,327,961 + MMP_RS08915 0.11 -0.0 1,328,272 + MMP_RS08915 0.40 -1.9 1,328,499 + MMP_RS08915 0.61 -4.1 1,328,524 + MMP_RS08915 0.63 -1.9 1,328,627 - MMP_RS08915 0.72 -0.3 1,328,664 - MMP_RS08915 0.76 -0.5 1,328,677 - MMP_RS08915 0.77 +0.8 1,329,051 + -3.5 1,329,290 + -2.5 1,329,347 + -3.9 1,329,349 - -4.5 1,329,352 + +1.6 1,329,546 - -1.1 1,329,735 + -0.9 1,329,768 - +0.5 1,329,768 - +0.0 1,329,768 - -0.7 1,329,796 + +0.7 1,329,849 - +1.4 1,329,923 + MMP_RS06965 0.14 +1.2 1,329,930 + MMP_RS06965 0.14 +1.9 1,330,037 + MMP_RS06965 0.22 +2.5 1,330,068 - MMP_RS06965 0.25 +1.9 1,330,283 + MMP_RS06965 0.41 +0.6 1,330,346 + MMP_RS06965 0.46 +0.7 1,330,348 + MMP_RS06965 0.46 +0.2
Or see this region's nucleotide sequence