Experiment: McCas_H2_complete Antimycin A 0.01 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS06940 and MMP_RS06945 are separated by 16 nucleotides MMP_RS06945 and MMP_RS06950 are separated by 129 nucleotides MMP_RS06950 and MMP_RS08915 are separated by 189 nucleotides
MMP_RS06940: MMP_RS06940 - polyprenyl diphosphate synthase, at 1,325,780 to 1,326,574
_RS06940
MMP_RS06945: MMP_RS06945 - methanogenesis marker protein Mmp4/MtxX, at 1,326,591 to 1,327,322
_RS06945
MMP_RS06950: MMP_RS06950 - histone family protein, at 1,327,452 to 1,327,652
_RS06950
MMP_RS08915: MMP_RS08915 - 2 5-diamino-6-(ribosylamino)-4(3H)-pyrimidinone 5'-phosphate reductase, at 1,327,842 to 1,328,924
_RS08915
Position (kb)
1327
1328 Strain fitness (log2 ratio)
-6
-5
-4
-3
-2
-1
0
1 at 1326.657 kb on + strand at 1326.660 kb on - strand at 1326.663 kb on + strand at 1326.734 kb on - strand at 1326.742 kb on + strand at 1326.774 kb on - strand at 1326.797 kb on + strand at 1326.797 kb on + strand at 1326.807 kb on - strand at 1326.999 kb on - strand at 1326.999 kb on - strand at 1327.023 kb on - strand at 1327.104 kb on + strand at 1327.318 kb on - strand at 1327.318 kb on - strand at 1327.319 kb on + strand at 1327.334 kb on - strand at 1327.346 kb on + strand at 1327.374 kb on + strand at 1327.376 kb on - strand at 1327.384 kb on - strand at 1327.384 kb on - strand at 1327.384 kb on - strand at 1327.384 kb on - strand at 1327.385 kb on + strand at 1327.385 kb on + strand at 1327.386 kb on - strand at 1327.387 kb on + strand at 1327.404 kb on - strand at 1327.405 kb on + strand at 1327.419 kb on - strand at 1327.422 kb on - strand at 1327.742 kb on - strand at 1327.816 kb on - strand at 1327.844 kb on + strand at 1327.961 kb on + strand, within MMP_RS08915 at 1328.272 kb on + strand, within MMP_RS08915 at 1328.499 kb on + strand, within MMP_RS08915 at 1328.524 kb on + strand, within MMP_RS08915 at 1328.627 kb on - strand, within MMP_RS08915
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_H2_complete Antimycin A 0.01 mM remove 1,326,657 + -0.2 1,326,660 - -3.1 1,326,663 + -3.0 1,326,734 - -1.8 1,326,742 + -0.6 1,326,774 - -2.9 1,326,797 + -1.9 1,326,797 + -0.8 1,326,807 - -2.3 1,326,999 - -4.6 1,326,999 - -3.9 1,327,023 - -1.1 1,327,104 + +1.2 1,327,318 - -2.8 1,327,318 - -3.5 1,327,319 + -6.2 1,327,334 - +1.7 1,327,346 + -0.6 1,327,374 + -0.8 1,327,376 - +0.8 1,327,384 - -0.3 1,327,384 - -0.0 1,327,384 - +1.0 1,327,384 - -1.5 1,327,385 + -1.9 1,327,385 + -3.1 1,327,386 - +0.9 1,327,387 + -0.0 1,327,404 - +0.6 1,327,405 + +0.3 1,327,419 - -1.8 1,327,422 - -0.1 1,327,742 - -0.3 1,327,816 - +0.3 1,327,844 + +1.4 1,327,961 + MMP_RS08915 0.11 -0.0 1,328,272 + MMP_RS08915 0.40 -1.9 1,328,499 + MMP_RS08915 0.61 -4.1 1,328,524 + MMP_RS08915 0.63 -1.9 1,328,627 - MMP_RS08915 0.72 -0.3
Or see this region's nucleotide sequence