Strain Fitness in Methanococcus maripaludis S2 around MMP_RS06910

Experiment: McCas_H2_complete Antimycin A 0.01 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS06895 and MMP_RS06900 are separated by 106 nucleotidesMMP_RS06900 and MMP_RS06905 are separated by 129 nucleotidesMMP_RS06905 and MMP_RS06910 are separated by 18 nucleotidesMMP_RS06910 and MMP_RS06915 are separated by 102 nucleotides MMP_RS06895: MMP_RS06895 - selenocysteine-specific translation elongation factor, at 1,316,720 to 1,318,126 _RS06895 MMP_RS06900: MMP_RS06900 - coenzyme F420-reducing hydrogenase FrhD protein, at 1,318,233 to 1,318,715 _RS06900 MMP_RS06905: MMP_RS06905 - hypothetical protein, at 1,318,845 to 1,319,039 _RS06905 MMP_RS06910: MMP_RS06910 - RlmF-related methyltransferase, at 1,319,058 to 1,319,852 _RS06910 MMP_RS06915: MMP_RS06915 - metallophosphoesterase, at 1,319,955 to 1,321,073 _RS06915 Position (kb) 1319 1320Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1318.163 kb on - strandat 1318.173 kb on + strandat 1318.175 kb on + strandat 1318.176 kb on - strandat 1318.176 kb on - strandat 1318.176 kb on - strandat 1318.176 kb on - strandat 1318.177 kb on + strandat 1318.177 kb on + strandat 1318.177 kb on + strandat 1318.185 kb on + strandat 1318.188 kb on - strandat 1318.189 kb on + strandat 1318.189 kb on + strandat 1318.229 kb on + strandat 1318.286 kb on + strand, within MMP_RS06900at 1318.557 kb on - strand, within MMP_RS06900at 1318.561 kb on - strand, within MMP_RS06900at 1318.562 kb on + strand, within MMP_RS06900at 1318.592 kb on + strand, within MMP_RS06900at 1318.753 kb on + strandat 1318.776 kb on - strandat 1318.777 kb on + strandat 1318.893 kb on + strand, within MMP_RS06905at 1318.973 kb on - strand, within MMP_RS06905at 1318.974 kb on + strand, within MMP_RS06905at 1319.033 kb on + strandat 1319.037 kb on - strandat 1319.351 kb on + strand, within MMP_RS06910at 1319.451 kb on + strand, within MMP_RS06910at 1319.451 kb on + strand, within MMP_RS06910at 1319.468 kb on - strand, within MMP_RS06910at 1319.471 kb on - strand, within MMP_RS06910at 1319.711 kb on - strand, within MMP_RS06910at 1319.717 kb on + strand, within MMP_RS06910at 1319.736 kb on + strand, within MMP_RS06910at 1319.770 kb on - strand, within MMP_RS06910at 1319.771 kb on + strand, within MMP_RS06910at 1319.886 kb on - strandat 1319.886 kb on - strandat 1319.891 kb on - strandat 1319.892 kb on + strandat 1319.895 kb on + strandat 1319.895 kb on + strandat 1319.934 kb on + strandat 1320.050 kb on - strandat 1320.296 kb on - strand, within MMP_RS06915at 1320.296 kb on - strand, within MMP_RS06915at 1320.342 kb on - strand, within MMP_RS06915at 1320.342 kb on - strand, within MMP_RS06915at 1320.646 kb on + strand, within MMP_RS06915at 1320.678 kb on + strand, within MMP_RS06915at 1320.808 kb on - strand, within MMP_RS06915

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Per-strain Table

Position Strand Gene LocusTag Fraction McCas_H2_complete Antimycin A 0.01 mM
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1,318,163 - -1.9
1,318,173 + -0.1
1,318,175 + -0.4
1,318,176 - -0.4
1,318,176 - -1.7
1,318,176 - -1.5
1,318,176 - -0.3
1,318,177 + +1.4
1,318,177 + +0.4
1,318,177 + -2.0
1,318,185 + -1.8
1,318,188 - +1.3
1,318,189 + -1.8
1,318,189 + -0.8
1,318,229 + -3.1
1,318,286 + MMP_RS06900 0.11 -1.2
1,318,557 - MMP_RS06900 0.67 -0.2
1,318,561 - MMP_RS06900 0.68 -1.3
1,318,562 + MMP_RS06900 0.68 -2.3
1,318,592 + MMP_RS06900 0.74 -2.1
1,318,753 + -0.0
1,318,776 - +0.6
1,318,777 + -0.6
1,318,893 + MMP_RS06905 0.25 -0.6
1,318,973 - MMP_RS06905 0.66 +0.9
1,318,974 + MMP_RS06905 0.66 +0.9
1,319,033 + -1.8
1,319,037 - +2.4
1,319,351 + MMP_RS06910 0.37 +1.2
1,319,451 + MMP_RS06910 0.49 +2.5
1,319,451 + MMP_RS06910 0.49 -0.9
1,319,468 - MMP_RS06910 0.52 +1.5
1,319,471 - MMP_RS06910 0.52 +2.7
1,319,711 - MMP_RS06910 0.82 +0.9
1,319,717 + MMP_RS06910 0.83 +0.7
1,319,736 + MMP_RS06910 0.85 +1.5
1,319,770 - MMP_RS06910 0.90 +1.7
1,319,771 + MMP_RS06910 0.90 +0.8
1,319,886 - -0.5
1,319,886 - +0.4
1,319,891 - -0.5
1,319,892 + +0.4
1,319,895 + -0.7
1,319,895 + +0.2
1,319,934 + +0.6
1,320,050 - -0.0
1,320,296 - MMP_RS06915 0.30 +0.5
1,320,296 - MMP_RS06915 0.30 +1.2
1,320,342 - MMP_RS06915 0.35 +1.3
1,320,342 - MMP_RS06915 0.35 +0.9
1,320,646 + MMP_RS06915 0.62 -1.3
1,320,678 + MMP_RS06915 0.65 +0.5
1,320,808 - MMP_RS06915 0.76 +0.4

Or see this region's nucleotide sequence