Strain Fitness in Methanococcus maripaludis S2 around MMP_RS06890

Experiment: McCas_H2_complete Antimycin A 0.01 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS06885 and MMP_RS06890 are separated by 19 nucleotidesMMP_RS06890 and MMP_RS06895 are separated by 10 nucleotides MMP_RS06885: MMP_RS06885 - 50S ribosome-binding GTPase, at 1,314,582 to 1,315,736 _RS06885 MMP_RS06890: MMP_RS06890 - mevalonate kinase, at 1,315,756 to 1,316,709 _RS06890 MMP_RS06895: MMP_RS06895 - selenocysteine-specific translation elongation factor, at 1,316,720 to 1,318,126 _RS06895 Position (kb) 1315 1316 1317Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 1314.771 kb on - strand, within MMP_RS06885at 1314.926 kb on + strand, within MMP_RS06885at 1315.212 kb on + strand, within MMP_RS06885at 1315.280 kb on + strand, within MMP_RS06885at 1316.083 kb on - strandat 1316.104 kb on + strandat 1316.147 kb on + strandat 1316.274 kb on + strandat 1316.539 kb on - strandat 1316.852 kb on + strandat 1317.209 kb on + strand, within MMP_RS06895at 1317.431 kb on - strand, within MMP_RS06895

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Per-strain Table

Position Strand Gene LocusTag Fraction McCas_H2_complete Antimycin A 0.01 mM
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1,314,771 - MMP_RS06885 0.16 -3.4
1,314,926 + MMP_RS06885 0.30 -3.8
1,315,212 + MMP_RS06885 0.55 -2.1
1,315,280 + MMP_RS06885 0.60 -2.9
1,316,083 - -0.9
1,316,104 + -4.4
1,316,147 + +1.5
1,316,274 + -3.7
1,316,539 - -4.1
1,316,852 + -0.6
1,317,209 + MMP_RS06895 0.35 -5.0
1,317,431 - MMP_RS06895 0.51 -4.6

Or see this region's nucleotide sequence