Strain Fitness in Methanococcus maripaludis S2 around MMP_RS05480

Experiment: McCas_H2_complete Antimycin A 0.01 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	McCas_H2_complete Antimycin A 0.01 mM
1,049,123	+		MMP_RS05470	0.23	+0.0
1,049,135	-		MMP_RS05470	0.24	-1.3
1,049,206	+		MMP_RS05470	0.31	+2.1
1,049,233	+		MMP_RS05470	0.34	+0.3
1,049,250	+		MMP_RS05470	0.36	+1.3
1,049,368	+		MMP_RS05470	0.48	+0.3
1,049,391	-		MMP_RS05470	0.51	-0.0
1,049,391	-		MMP_RS05470	0.51	-0.4
1,049,396	+		MMP_RS05470	0.51	-3.0
1,049,396	+		MMP_RS05470	0.51	-0.2
1,049,534	+		MMP_RS05470	0.65	+1.8
1,049,583	-		MMP_RS05470	0.70	+2.4
1,049,647	-		MMP_RS05470	0.77	-0.4
1,049,647	-		MMP_RS05470	0.77	+0.3
1,049,647	-		MMP_RS05470	0.77	+0.5
1,049,648	+		MMP_RS05470	0.77	+1.7
1,049,648	+		MMP_RS05470	0.77	-0.2
1,049,683	+		MMP_RS05470	0.81	-0.4
1,049,683	+		MMP_RS05470	0.81	-0.8
1,049,799	+				+0.4
1,049,996	-				+0.1
1,050,010	-				+1.8
1,050,010	-				+1.6
1,050,016	+				+0.8
1,050,060	+				+0.7
1,050,129	-				+0.2
1,050,290	+		MMP_RS05480	0.13	+1.2
1,050,314	-		MMP_RS05480	0.15	+0.6
1,050,538	+		MMP_RS05480	0.31	-1.1
1,050,612	+		MMP_RS05480	0.36	-0.4
1,050,656	-		MMP_RS05480	0.39	-0.0
1,050,660	-		MMP_RS05480	0.39	+2.1
1,050,694	-		MMP_RS05480	0.41	-0.4
1,050,698	-		MMP_RS05480	0.42	-0.1
1,050,761	-		MMP_RS05480	0.46	+0.9
1,050,762	+		MMP_RS05480	0.46	+0.3
1,050,863	-		MMP_RS05480	0.53	-0.1
1,050,863	-		MMP_RS05480	0.53	+1.0
1,050,863	-		MMP_RS05480	0.53	+1.2
1,050,864	+		MMP_RS05480	0.53	-1.4
1,050,864	+		MMP_RS05480	0.53	+0.7
1,050,864	+		MMP_RS05480	0.53	+0.8
1,050,864	+		MMP_RS05480	0.53	-0.5
1,050,864	+		MMP_RS05480	0.53	+0.7
1,050,865	-		MMP_RS05480	0.53	+0.1
1,050,865	-		MMP_RS05480	0.53	-0.6
1,050,865	-		MMP_RS05480	0.53	+0.7
1,050,866	+		MMP_RS05480	0.53	+1.3
1,050,866	+		MMP_RS05480	0.53	-0.2
1,050,866	+		MMP_RS05480	0.53	+1.9
1,050,867	-		MMP_RS05480	0.53	+1.8
1,050,868	+		MMP_RS05480	0.53	-0.1
1,050,927	+		MMP_RS05480	0.57	+2.2
1,050,945	-		MMP_RS05480	0.59	-1.5
1,050,945	-		MMP_RS05480	0.59	+0.9
1,050,950	-		MMP_RS05480	0.59	+0.9
1,050,951	+		MMP_RS05480	0.59	+1.1
1,050,956	-		MMP_RS05480	0.59	+0.2
1,050,994	+		MMP_RS05480	0.62	+2.1
1,051,245	-		MMP_RS05480	0.79	+0.7
1,051,246	+		MMP_RS05480	0.79	-0.6
1,051,303	+		MMP_RS05480	0.83	+2.2
1,051,303	+		MMP_RS05480	0.83	+0.1
1,051,308	+		MMP_RS05480	0.84	+1.4
1,051,308	+		MMP_RS05480	0.84	+2.7
1,051,311	+		MMP_RS05480	0.84	-0.5
1,051,311	+		MMP_RS05480	0.84	+0.6
1,051,313	+		MMP_RS05480	0.84	+0.2
1,051,327	+		MMP_RS05480	0.85	+0.1
1,051,331	+		MMP_RS05480	0.85	+0.5
1,051,334	+		MMP_RS05480	0.85	+1.9
1,051,491	-				-3.1
1,051,555	-				-1.4
1,051,574	+				+0.9
1,051,600	-				+0.8
1,051,652	-				-0.2
1,051,653	+				+0.7
1,051,703	+		MMP_RS05485	0.10	+0.7
1,051,709	+		MMP_RS05485	0.11	-0.4
1,051,709	+		MMP_RS05485	0.11	-0.9
1,051,713	+		MMP_RS05485	0.11	+0.9
1,051,731	+		MMP_RS05485	0.12	+1.1
1,051,732	-		MMP_RS05485	0.12	+1.7
1,051,732	-		MMP_RS05485	0.12	-0.8
1,051,733	+		MMP_RS05485	0.12	+1.5
1,051,733	+		MMP_RS05485	0.12	+0.7
1,051,749	-		MMP_RS05485	0.13	+0.7
1,051,852	-		MMP_RS05485	0.21	+1.6
1,051,870	+		MMP_RS05485	0.22	+0.1
1,051,906	-		MMP_RS05485	0.24	+0.4
1,051,906	-		MMP_RS05485	0.24	+0.5
1,051,919	+		MMP_RS05485	0.25	+0.4
1,051,959	+		MMP_RS05485	0.28	+1.1
1,052,221	+		MMP_RS05485	0.46	-1.2
1,052,242	+		MMP_RS05485	0.48	+0.9
1,052,381	+		MMP_RS05485	0.58	-0.7