Experiment: McCas_H2_complete Antimycin A 0.01 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS05320 and MMP_RS05325 are separated by 86 nucleotides MMP_RS05325 and MMP_RS05330 are separated by 115 nucleotides MMP_RS05330 and MMP_RS05335 are separated by 61 nucleotides
MMP_RS05320: MMP_RS05320 - NFACT family protein, at 1,019,501 to 1,021,543
_RS05320
MMP_RS05325: MMP_RS05325 - hypothetical protein, at 1,021,630 to 1,021,989
_RS05325
MMP_RS05330: MMP_RS05330 - EMC3/TMCO1 family protein, at 1,022,105 to 1,022,701
_RS05330
MMP_RS05335: MMP_RS05335 - adenylate kinase, at 1,022,763 to 1,023,341
_RS05335
Position (kb)
1021
1022 Strain fitness (log2 ratio)
-6
-5
-4
-3
-2
-1
0
1
2
3 at 1020.691 kb on + strand at 1020.769 kb on - strand at 1020.771 kb on - strand at 1020.771 kb on - strand at 1020.772 kb on + strand at 1020.772 kb on + strand at 1020.772 kb on + strand at 1020.772 kb on + strand at 1020.772 kb on + strand at 1020.818 kb on + strand at 1020.858 kb on - strand at 1021.032 kb on + strand at 1021.050 kb on - strand at 1021.051 kb on + strand at 1021.085 kb on + strand at 1021.116 kb on - strand at 1021.254 kb on + strand at 1021.335 kb on - strand at 1021.405 kb on - strand at 1021.413 kb on - strand at 1021.447 kb on + strand at 1021.548 kb on - strand at 1021.576 kb on - strand at 1021.597 kb on + strand at 1021.662 kb on + strand at 1021.719 kb on - strand, within MMP_RS05325 at 1021.747 kb on - strand, within MMP_RS05325 at 1021.747 kb on - strand, within MMP_RS05325 at 1021.747 kb on - strand, within MMP_RS05325 at 1021.747 kb on - strand, within MMP_RS05325 at 1021.747 kb on - strand, within MMP_RS05325 at 1021.748 kb on + strand, within MMP_RS05325 at 1021.748 kb on + strand, within MMP_RS05325 at 1021.748 kb on + strand, within MMP_RS05325 at 1021.748 kb on + strand, within MMP_RS05325 at 1021.789 kb on + strand, within MMP_RS05325 at 1021.800 kb on + strand, within MMP_RS05325 at 1021.800 kb on + strand, within MMP_RS05325 at 1022.027 kb on - strand at 1022.027 kb on - strand at 1022.028 kb on + strand at 1022.107 kb on + strand at 1022.222 kb on - strand at 1022.730 kb on - strand at 1022.759 kb on - strand at 1022.759 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_H2_complete Antimycin A 0.01 mM remove 1,020,691 + -0.8 1,020,769 - -3.1 1,020,771 - -1.7 1,020,771 - -2.3 1,020,772 + -0.5 1,020,772 + -5.9 1,020,772 + -0.8 1,020,772 + -0.7 1,020,772 + -1.0 1,020,818 + -3.9 1,020,858 - -1.5 1,021,032 + -2.4 1,021,050 - -1.2 1,021,051 + -2.3 1,021,085 + -0.3 1,021,116 - -3.7 1,021,254 + -3.8 1,021,335 - -0.2 1,021,405 - -6.3 1,021,413 - +0.9 1,021,447 + -1.5 1,021,548 - -0.9 1,021,576 - -0.2 1,021,597 + +1.0 1,021,662 + -1.1 1,021,719 - MMP_RS05325 0.25 +0.3 1,021,747 - MMP_RS05325 0.33 -2.5 1,021,747 - MMP_RS05325 0.33 +0.1 1,021,747 - MMP_RS05325 0.33 +0.3 1,021,747 - MMP_RS05325 0.33 -0.5 1,021,747 - MMP_RS05325 0.33 +0.4 1,021,748 + MMP_RS05325 0.33 -1.7 1,021,748 + MMP_RS05325 0.33 -1.0 1,021,748 + MMP_RS05325 0.33 -1.7 1,021,748 + MMP_RS05325 0.33 -2.0 1,021,789 + MMP_RS05325 0.44 +0.1 1,021,800 + MMP_RS05325 0.47 +0.9 1,021,800 + MMP_RS05325 0.47 -0.2 1,022,027 - -0.0 1,022,027 - +0.6 1,022,028 + +2.8 1,022,107 + -1.5 1,022,222 - -2.8 1,022,730 - -0.9 1,022,759 - -4.5 1,022,759 - -2.7
Or see this region's nucleotide sequence