Experiment: McCas_H2_complete Antimycin A 0.01 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS05125 and MMP_RS05130 are separated by 379 nucleotides MMP_RS05130 and MMP_RS09015 are separated by 57 nucleotides MMP_RS09015 and MMP_RS05135 are separated by 28 nucleotides MMP_RS05135 and MMP_RS05140 are separated by 118 nucleotides
MMP_RS05125: MMP_RS05125 - D-aminoacyl-tRNA deacylase, at 977,591 to 978,355
_RS05125
MMP_RS05130: MMP_RS05130 - DUF2226 domain-containing protein, at 978,735 to 980,321
_RS05130
MMP_RS09015: MMP_RS09015 - hypothetical protein, at 980,379 to 980,537
_RS09015
MMP_RS05135: MMP_RS05135 - hypothetical protein, at 980,566 to 981,087
_RS05135
MMP_RS05140: MMP_RS05140 - helix-turn-helix transcriptional regulator, at 981,206 to 981,406
_RS05140
Position (kb) 978
979
980
981 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3 at 977.735 kb on - strand, within MMP_RS05125 at 977.736 kb on + strand, within MMP_RS05125 at 977.736 kb on + strand, within MMP_RS05125 at 977.736 kb on + strand, within MMP_RS05125 at 977.736 kb on + strand, within MMP_RS05125 at 977.737 kb on - strand, within MMP_RS05125 at 977.739 kb on - strand, within MMP_RS05125 at 977.740 kb on + strand, within MMP_RS05125 at 977.740 kb on + strand, within MMP_RS05125 at 977.787 kb on - strand, within MMP_RS05125 at 977.788 kb on + strand, within MMP_RS05125 at 977.791 kb on - strand, within MMP_RS05125 at 977.791 kb on - strand, within MMP_RS05125 at 977.791 kb on - strand, within MMP_RS05125 at 977.792 kb on + strand, within MMP_RS05125 at 977.952 kb on - strand, within MMP_RS05125 at 978.072 kb on - strand, within MMP_RS05125 at 978.137 kb on - strand, within MMP_RS05125 at 978.193 kb on + strand, within MMP_RS05125 at 978.214 kb on + strand, within MMP_RS05125 at 978.224 kb on + strand, within MMP_RS05125 at 978.299 kb on + strand at 978.389 kb on - strand at 978.390 kb on + strand at 978.393 kb on - strand at 978.394 kb on + strand at 978.394 kb on + strand at 978.396 kb on - strand at 978.408 kb on - strand at 978.409 kb on + strand at 978.423 kb on - strand at 978.423 kb on - strand at 978.423 kb on - strand at 978.424 kb on + strand at 978.424 kb on + strand at 978.435 kb on - strand at 978.439 kb on - strand at 978.439 kb on - strand at 978.446 kb on - strand at 978.447 kb on + strand at 978.630 kb on - strand at 978.630 kb on - strand at 978.631 kb on + strand at 978.633 kb on + strand at 978.702 kb on - strand at 978.703 kb on + strand at 978.721 kb on - strand at 978.745 kb on - strand at 978.745 kb on - strand at 978.745 kb on - strand at 978.745 kb on - strand at 978.746 kb on + strand at 978.746 kb on + strand at 978.777 kb on - strand at 978.874 kb on - strand at 978.882 kb on + strand at 978.909 kb on - strand, within MMP_RS05130 at 978.944 kb on + strand, within MMP_RS05130 at 979.233 kb on - strand, within MMP_RS05130 at 979.234 kb on + strand, within MMP_RS05130 at 979.286 kb on - strand, within MMP_RS05130 at 979.305 kb on + strand, within MMP_RS05130 at 979.330 kb on - strand, within MMP_RS05130 at 979.331 kb on + strand, within MMP_RS05130 at 979.371 kb on - strand, within MMP_RS05130 at 979.373 kb on - strand, within MMP_RS05130 at 979.374 kb on + strand, within MMP_RS05130 at 979.392 kb on - strand, within MMP_RS05130 at 979.427 kb on - strand, within MMP_RS05130 at 979.482 kb on - strand, within MMP_RS05130 at 979.503 kb on + strand, within MMP_RS05130 at 979.513 kb on + strand, within MMP_RS05130 at 979.600 kb on - strand, within MMP_RS05130 at 979.610 kb on - strand, within MMP_RS05130 at 979.611 kb on + strand, within MMP_RS05130 at 979.725 kb on + strand, within MMP_RS05130 at 979.736 kb on + strand, within MMP_RS05130 at 979.765 kb on + strand, within MMP_RS05130 at 979.765 kb on + strand, within MMP_RS05130 at 979.855 kb on - strand, within MMP_RS05130 at 979.867 kb on + strand, within MMP_RS05130 at 979.867 kb on + strand, within MMP_RS05130 at 979.868 kb on - strand, within MMP_RS05130 at 979.868 kb on - strand, within MMP_RS05130 at 979.868 kb on - strand, within MMP_RS05130 at 979.868 kb on - strand, within MMP_RS05130 at 979.868 kb on - strand, within MMP_RS05130 at 979.868 kb on - strand, within MMP_RS05130 at 979.870 kb on - strand, within MMP_RS05130 at 979.871 kb on + strand, within MMP_RS05130 at 979.871 kb on + strand, within MMP_RS05130 at 979.956 kb on + strand, within MMP_RS05130 at 979.958 kb on - strand, within MMP_RS05130 at 979.962 kb on - strand, within MMP_RS05130 at 979.969 kb on - strand, within MMP_RS05130 at 979.969 kb on - strand, within MMP_RS05130 at 979.970 kb on + strand, within MMP_RS05130 at 980.016 kb on + strand, within MMP_RS05130 at 980.065 kb on - strand, within MMP_RS05130 at 980.065 kb on - strand, within MMP_RS05130 at 980.066 kb on + strand, within MMP_RS05130 at 980.066 kb on + strand, within MMP_RS05130 at 980.067 kb on - strand, within MMP_RS05130 at 980.073 kb on - strand, within MMP_RS05130 at 980.073 kb on - strand, within MMP_RS05130 at 980.115 kb on + strand, within MMP_RS05130 at 980.115 kb on + strand, within MMP_RS05130 at 980.140 kb on + strand, within MMP_RS05130 at 980.242 kb on - strand at 980.242 kb on - strand at 980.243 kb on + strand at 980.246 kb on - strand at 980.277 kb on + strand at 980.313 kb on - strand at 980.314 kb on + strand at 980.315 kb on - strand at 980.315 kb on - strand at 980.316 kb on + strand at 980.316 kb on + strand at 980.316 kb on + strand at 980.316 kb on + strand at 980.316 kb on + strand at 980.347 kb on - strand at 980.348 kb on + strand at 980.378 kb on - strand at 980.385 kb on + strand at 980.392 kb on + strand at 980.621 kb on + strand, within MMP_RS05135 at 980.630 kb on - strand, within MMP_RS05135 at 980.660 kb on - strand, within MMP_RS05135 at 980.696 kb on - strand, within MMP_RS05135 at 980.697 kb on + strand, within MMP_RS05135 at 980.805 kb on - strand, within MMP_RS05135 at 980.805 kb on - strand, within MMP_RS05135 at 980.805 kb on - strand, within MMP_RS05135 at 980.879 kb on + strand, within MMP_RS05135 at 980.879 kb on + strand, within MMP_RS05135 at 980.936 kb on - strand, within MMP_RS05135 at 980.953 kb on - strand, within MMP_RS05135 at 980.954 kb on + strand, within MMP_RS05135 at 980.957 kb on - strand, within MMP_RS05135 at 980.957 kb on - strand, within MMP_RS05135 at 980.957 kb on - strand, within MMP_RS05135 at 980.957 kb on - strand, within MMP_RS05135 at 980.957 kb on - strand, within MMP_RS05135 at 980.957 kb on - strand, within MMP_RS05135 at 980.957 kb on - strand, within MMP_RS05135 at 980.958 kb on + strand, within MMP_RS05135 at 980.958 kb on + strand, within MMP_RS05135 at 980.958 kb on + strand, within MMP_RS05135 at 980.958 kb on + strand, within MMP_RS05135 at 980.958 kb on + strand, within MMP_RS05135 at 980.958 kb on + strand, within MMP_RS05135 at 980.958 kb on + strand, within MMP_RS05135 at 980.958 kb on + strand, within MMP_RS05135 at 980.958 kb on + strand, within MMP_RS05135 at 980.958 kb on + strand, within MMP_RS05135 at 980.958 kb on + strand, within MMP_RS05135 at 980.958 kb on + strand, within MMP_RS05135 at 980.958 kb on + strand, within MMP_RS05135 at 980.958 kb on + strand, within MMP_RS05135 at 980.959 kb on - strand, within MMP_RS05135 at 980.959 kb on - strand, within MMP_RS05135 at 980.959 kb on - strand, within MMP_RS05135 at 980.959 kb on - strand, within MMP_RS05135 at 980.959 kb on - strand, within MMP_RS05135 at 980.959 kb on - strand, within MMP_RS05135 at 980.959 kb on - strand, within MMP_RS05135 at 980.959 kb on - strand, within MMP_RS05135 at 980.959 kb on - strand, within MMP_RS05135 at 980.959 kb on - strand, within MMP_RS05135 at 980.960 kb on + strand, within MMP_RS05135 at 980.960 kb on + strand, within MMP_RS05135 at 980.960 kb on + strand, within MMP_RS05135 at 980.960 kb on + strand, within MMP_RS05135 at 980.960 kb on + strand, within MMP_RS05135 at 980.960 kb on + strand, within MMP_RS05135 at 980.960 kb on + strand, within MMP_RS05135 at 980.960 kb on + strand, within MMP_RS05135 at 980.960 kb on + strand, within MMP_RS05135 at 980.960 kb on + strand, within MMP_RS05135 at 980.960 kb on + strand, within MMP_RS05135 at 980.960 kb on + strand, within MMP_RS05135 at 980.960 kb on + strand, within MMP_RS05135 at 980.960 kb on + strand, within MMP_RS05135 at 980.960 kb on + strand, within MMP_RS05135 at 980.960 kb on + strand, within MMP_RS05135 at 980.960 kb on + strand, within MMP_RS05135 at 980.960 kb on + strand, within MMP_RS05135 at 980.961 kb on - strand, within MMP_RS05135 at 980.961 kb on - strand, within MMP_RS05135 at 980.961 kb on - strand, within MMP_RS05135 at 980.961 kb on - strand, within MMP_RS05135 at 980.961 kb on - strand, within MMP_RS05135 at 980.961 kb on - strand, within MMP_RS05135 at 980.961 kb on - strand, within MMP_RS05135 at 980.961 kb on - strand, within MMP_RS05135 at 980.961 kb on - strand, within MMP_RS05135 at 980.961 kb on - strand, within MMP_RS05135 at 980.962 kb on + strand, within MMP_RS05135 at 980.962 kb on + strand, within MMP_RS05135 at 980.962 kb on + strand, within MMP_RS05135 at 980.962 kb on + strand, within MMP_RS05135 at 980.962 kb on + strand, within MMP_RS05135 at 980.962 kb on + strand, within MMP_RS05135 at 980.962 kb on + strand, within MMP_RS05135 at 980.962 kb on + strand, within MMP_RS05135 at 980.963 kb on - strand, within MMP_RS05135 at 980.964 kb on + strand, within MMP_RS05135 at 980.996 kb on + strand, within MMP_RS05135 at 980.998 kb on + strand, within MMP_RS05135 at 981.230 kb on - strand, within MMP_RS05140 at 981.239 kb on - strand, within MMP_RS05140
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_H2_complete Antimycin A 0.01 mM remove 977,735 - MMP_RS05125 0.19 -0.6 977,736 + MMP_RS05125 0.19 -2.1 977,736 + MMP_RS05125 0.19 +1.2 977,736 + MMP_RS05125 0.19 -0.1 977,736 + MMP_RS05125 0.19 +0.7 977,737 - MMP_RS05125 0.19 -1.1 977,739 - MMP_RS05125 0.19 -0.4 977,740 + MMP_RS05125 0.19 +0.4 977,740 + MMP_RS05125 0.19 -4.3 977,787 - MMP_RS05125 0.26 +1.3 977,788 + MMP_RS05125 0.26 -0.4 977,791 - MMP_RS05125 0.26 -0.7 977,791 - MMP_RS05125 0.26 +1.2 977,791 - MMP_RS05125 0.26 +0.3 977,792 + MMP_RS05125 0.26 +1.0 977,952 - MMP_RS05125 0.47 +1.4 978,072 - MMP_RS05125 0.63 -0.1 978,137 - MMP_RS05125 0.71 -0.8 978,193 + MMP_RS05125 0.79 +0.8 978,214 + MMP_RS05125 0.81 -0.3 978,224 + MMP_RS05125 0.83 +1.5 978,299 + +1.1 978,389 - -0.3 978,390 + +1.2 978,393 - -0.2 978,394 + -2.0 978,394 + +0.3 978,396 - -0.5 978,408 - +0.9 978,409 + +0.3 978,423 - -0.7 978,423 - -0.0 978,423 - -0.6 978,424 + -0.1 978,424 + +0.6 978,435 - +0.6 978,439 - -0.3 978,439 - -0.9 978,446 - -0.3 978,447 + +0.6 978,630 - +1.5 978,630 - +0.1 978,631 + +0.8 978,633 + -0.7 978,702 - +0.1 978,703 + -0.0 978,721 - -2.1 978,745 - -0.8 978,745 - -0.6 978,745 - -2.3 978,745 - -1.3 978,746 + -0.9 978,746 + -1.3 978,777 - -0.8 978,874 - -1.0 978,882 + -0.2 978,909 - MMP_RS05130 0.11 -0.1 978,944 + MMP_RS05130 0.13 -0.0 979,233 - MMP_RS05130 0.31 +0.3 979,234 + MMP_RS05130 0.31 +0.1 979,286 - MMP_RS05130 0.35 -0.6 979,305 + MMP_RS05130 0.36 -1.5 979,330 - MMP_RS05130 0.37 -0.6 979,331 + MMP_RS05130 0.38 -1.2 979,371 - MMP_RS05130 0.40 -1.3 979,373 - MMP_RS05130 0.40 -0.3 979,374 + MMP_RS05130 0.40 -0.7 979,392 - MMP_RS05130 0.41 -0.9 979,427 - MMP_RS05130 0.44 -1.0 979,482 - MMP_RS05130 0.47 -0.2 979,503 + MMP_RS05130 0.48 -1.2 979,513 + MMP_RS05130 0.49 -3.3 979,600 - MMP_RS05130 0.55 -1.9 979,610 - MMP_RS05130 0.55 -1.3 979,611 + MMP_RS05130 0.55 -2.1 979,725 + MMP_RS05130 0.62 -0.2 979,736 + MMP_RS05130 0.63 -0.6 979,765 + MMP_RS05130 0.65 -3.0 979,765 + MMP_RS05130 0.65 -0.6 979,855 - MMP_RS05130 0.71 -0.5 979,867 + MMP_RS05130 0.71 -0.7 979,867 + MMP_RS05130 0.71 +1.3 979,868 - MMP_RS05130 0.71 -0.5 979,868 - MMP_RS05130 0.71 +0.5 979,868 - MMP_RS05130 0.71 -2.8 979,868 - MMP_RS05130 0.71 -1.1 979,868 - MMP_RS05130 0.71 -2.0 979,868 - MMP_RS05130 0.71 +1.8 979,870 - MMP_RS05130 0.72 -2.2 979,871 + MMP_RS05130 0.72 -1.0 979,871 + MMP_RS05130 0.72 +1.0 979,956 + MMP_RS05130 0.77 +0.7 979,958 - MMP_RS05130 0.77 +0.3 979,962 - MMP_RS05130 0.77 -0.9 979,969 - MMP_RS05130 0.78 +0.3 979,969 - MMP_RS05130 0.78 -2.1 979,970 + MMP_RS05130 0.78 -1.1 980,016 + MMP_RS05130 0.81 +0.4 980,065 - MMP_RS05130 0.84 +0.8 980,065 - MMP_RS05130 0.84 +1.0 980,066 + MMP_RS05130 0.84 +0.5 980,066 + MMP_RS05130 0.84 -0.9 980,067 - MMP_RS05130 0.84 +0.1 980,073 - MMP_RS05130 0.84 -0.0 980,073 - MMP_RS05130 0.84 +1.4 980,115 + MMP_RS05130 0.87 -1.1 980,115 + MMP_RS05130 0.87 +0.6 980,140 + MMP_RS05130 0.89 -0.1 980,242 - -2.5 980,242 - -0.1 980,243 + +0.7 980,246 - +1.5 980,277 + +1.6 980,313 - +0.0 980,314 + +1.2 980,315 - +0.1 980,315 - -1.7 980,316 + -0.4 980,316 + -0.4 980,316 + -1.7 980,316 + -0.9 980,316 + -0.3 980,347 - +0.6 980,348 + -0.6 980,378 - +0.8 980,385 + -0.4 980,392 + +0.6 980,621 + MMP_RS05135 0.11 +0.8 980,630 - MMP_RS05135 0.12 -0.2 980,660 - MMP_RS05135 0.18 +1.7 980,696 - MMP_RS05135 0.25 +1.5 980,697 + MMP_RS05135 0.25 -0.6 980,805 - MMP_RS05135 0.46 +0.6 980,805 - MMP_RS05135 0.46 +0.5 980,805 - MMP_RS05135 0.46 +0.9 980,879 + MMP_RS05135 0.60 -0.1 980,879 + MMP_RS05135 0.60 +0.2 980,936 - MMP_RS05135 0.71 +0.9 980,953 - MMP_RS05135 0.74 -1.1 980,954 + MMP_RS05135 0.74 -0.7 980,957 - MMP_RS05135 0.75 -1.1 980,957 - MMP_RS05135 0.75 -0.4 980,957 - MMP_RS05135 0.75 -0.0 980,957 - MMP_RS05135 0.75 -0.8 980,957 - MMP_RS05135 0.75 -1.6 980,957 - MMP_RS05135 0.75 +1.3 980,957 - MMP_RS05135 0.75 +0.4 980,958 + MMP_RS05135 0.75 +2.1 980,958 + MMP_RS05135 0.75 -0.0 980,958 + MMP_RS05135 0.75 +0.5 980,958 + MMP_RS05135 0.75 +1.0 980,958 + MMP_RS05135 0.75 +0.8 980,958 + MMP_RS05135 0.75 -0.5 980,958 + MMP_RS05135 0.75 +0.8 980,958 + MMP_RS05135 0.75 +1.1 980,958 + MMP_RS05135 0.75 +0.9 980,958 + MMP_RS05135 0.75 +0.0 980,958 + MMP_RS05135 0.75 -1.9 980,958 + MMP_RS05135 0.75 -0.6 980,958 + MMP_RS05135 0.75 -0.7 980,958 + MMP_RS05135 0.75 +0.2 980,959 - MMP_RS05135 0.75 +1.1 980,959 - MMP_RS05135 0.75 -0.0 980,959 - MMP_RS05135 0.75 -1.9 980,959 - MMP_RS05135 0.75 -0.2 980,959 - MMP_RS05135 0.75 +1.5 980,959 - MMP_RS05135 0.75 -0.7 980,959 - MMP_RS05135 0.75 -0.7 980,959 - MMP_RS05135 0.75 +3.0 980,959 - MMP_RS05135 0.75 +0.0 980,959 - MMP_RS05135 0.75 +1.3 980,960 + MMP_RS05135 0.75 -1.4 980,960 + MMP_RS05135 0.75 -0.7 980,960 + MMP_RS05135 0.75 -0.6 980,960 + MMP_RS05135 0.75 -0.1 980,960 + MMP_RS05135 0.75 -0.7 980,960 + MMP_RS05135 0.75 -3.0 980,960 + MMP_RS05135 0.75 -1.0 980,960 + MMP_RS05135 0.75 +0.4 980,960 + MMP_RS05135 0.75 -2.8 980,960 + MMP_RS05135 0.75 +0.3 980,960 + MMP_RS05135 0.75 +1.4 980,960 + MMP_RS05135 0.75 +2.5 980,960 + MMP_RS05135 0.75 +0.8 980,960 + MMP_RS05135 0.75 -0.6 980,960 + MMP_RS05135 0.75 -3.0 980,960 + MMP_RS05135 0.75 -0.2 980,960 + MMP_RS05135 0.75 +2.3 980,960 + MMP_RS05135 0.75 +1.7 980,961 - MMP_RS05135 0.76 -0.5 980,961 - MMP_RS05135 0.76 +0.1 980,961 - MMP_RS05135 0.76 +0.5 980,961 - MMP_RS05135 0.76 +2.3 980,961 - MMP_RS05135 0.76 +1.7 980,961 - MMP_RS05135 0.76 -4.9 980,961 - MMP_RS05135 0.76 -0.8 980,961 - MMP_RS05135 0.76 +0.1 980,961 - MMP_RS05135 0.76 +2.2 980,961 - MMP_RS05135 0.76 -0.5 980,962 + MMP_RS05135 0.76 +0.4 980,962 + MMP_RS05135 0.76 +0.7 980,962 + MMP_RS05135 0.76 +1.7 980,962 + MMP_RS05135 0.76 +0.3 980,962 + MMP_RS05135 0.76 +1.2 980,962 + MMP_RS05135 0.76 -0.7 980,962 + MMP_RS05135 0.76 -0.8 980,962 + MMP_RS05135 0.76 -0.2 980,963 - MMP_RS05135 0.76 +0.8 980,964 + MMP_RS05135 0.76 +0.0 980,996 + MMP_RS05135 0.82 +0.2 980,998 + MMP_RS05135 0.83 -1.0 981,230 - MMP_RS05140 0.12 -0.5 981,239 - MMP_RS05140 0.16 +1.1
Or see this region's nucleotide sequence