Experiment: McCas_H2_complete Antimycin A 0.01 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS04285 and MMP_RS04290 are separated by 8 nucleotides MMP_RS04290 and MMP_RS04295 are separated by 90 nucleotides
MMP_RS04285: MMP_RS04285 - Ni/Fe hydrogenase subunit alpha, at 816,716 to 818,131
_RS04285
MMP_RS04290: MMP_RS04290 - 4Fe-4S binding protein, at 818,140 to 819,333
_RS04290
MMP_RS04295: MMP_RS04295 - CoB--CoM heterodisulfide reductase iron-sulfur subunit A family protein, at 819,424 to 821,388
_RS04295
Position (kb) 818
819
820 Strain fitness (log2 ratio) -2
-1
0
1 at 817.417 kb on - strand, within MMP_RS04285 at 817.417 kb on - strand, within MMP_RS04285 at 817.422 kb on + strand, within MMP_RS04285 at 817.527 kb on + strand, within MMP_RS04285 at 817.640 kb on - strand, within MMP_RS04285 at 817.644 kb on + strand, within MMP_RS04285 at 817.752 kb on - strand, within MMP_RS04285 at 817.752 kb on - strand, within MMP_RS04285 at 817.782 kb on - strand, within MMP_RS04285 at 817.968 kb on - strand, within MMP_RS04285 at 818.170 kb on + strand at 818.262 kb on + strand, within MMP_RS04290 at 818.301 kb on + strand, within MMP_RS04290 at 818.367 kb on - strand, within MMP_RS04290 at 818.506 kb on + strand, within MMP_RS04290 at 818.631 kb on - strand, within MMP_RS04290 at 818.674 kb on + strand, within MMP_RS04290 at 818.766 kb on - strand, within MMP_RS04290 at 818.850 kb on - strand, within MMP_RS04290 at 818.927 kb on - strand, within MMP_RS04290 at 818.972 kb on - strand, within MMP_RS04290 at 819.115 kb on + strand, within MMP_RS04290 at 819.177 kb on + strand, within MMP_RS04290 at 819.448 kb on - strand at 819.621 kb on + strand, within MMP_RS04295 at 819.657 kb on - strand, within MMP_RS04295 at 819.658 kb on + strand, within MMP_RS04295 at 819.789 kb on + strand, within MMP_RS04295 at 819.987 kb on + strand, within MMP_RS04295 at 820.141 kb on - strand, within MMP_RS04295 at 820.194 kb on - strand, within MMP_RS04295 at 820.195 kb on + strand, within MMP_RS04295
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_H2_complete Antimycin A 0.01 mM remove 817,417 - MMP_RS04285 0.50 -0.5 817,417 - MMP_RS04285 0.50 -0.1 817,422 + MMP_RS04285 0.50 -1.5 817,527 + MMP_RS04285 0.57 -1.9 817,640 - MMP_RS04285 0.65 -2.3 817,644 + MMP_RS04285 0.66 +0.2 817,752 - MMP_RS04285 0.73 +1.0 817,752 - MMP_RS04285 0.73 -0.2 817,782 - MMP_RS04285 0.75 -1.8 817,968 - MMP_RS04285 0.88 -0.5 818,170 + +1.6 818,262 + MMP_RS04290 0.10 -0.7 818,301 + MMP_RS04290 0.13 -1.6 818,367 - MMP_RS04290 0.19 -2.2 818,506 + MMP_RS04290 0.31 +1.0 818,631 - MMP_RS04290 0.41 -1.6 818,674 + MMP_RS04290 0.45 -0.4 818,766 - MMP_RS04290 0.52 -0.3 818,850 - MMP_RS04290 0.59 -0.2 818,927 - MMP_RS04290 0.66 -1.7 818,972 - MMP_RS04290 0.70 +0.1 819,115 + MMP_RS04290 0.82 +0.1 819,177 + MMP_RS04290 0.87 +0.6 819,448 - -0.4 819,621 + MMP_RS04295 0.10 -0.3 819,657 - MMP_RS04295 0.12 -1.3 819,658 + MMP_RS04295 0.12 +0.9 819,789 + MMP_RS04295 0.19 +1.3 819,987 + MMP_RS04295 0.29 +0.1 820,141 - MMP_RS04295 0.36 -2.3 820,194 - MMP_RS04295 0.39 +1.6 820,195 + MMP_RS04295 0.39 +0.4
Or see this region's nucleotide sequence