Experiment: McCas_H2_complete Antimycin A 0.01 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS04275 and MMP_RS04280 are separated by 16 nucleotides MMP_RS04280 and MMP_RS04285 are separated by 21 nucleotides MMP_RS04285 and MMP_RS04290 are separated by 8 nucleotides
MMP_RS04275: MMP_RS04275 - hydrogenase iron-sulfur subunit, at 815,353 to 815,775
_RS04275
MMP_RS04280: MMP_RS04280 - coenzyme F420-non-reducing hydrogenase subunit gamma, at 815,792 to 816,694
_RS04280
MMP_RS04285: MMP_RS04285 - Ni/Fe hydrogenase subunit alpha, at 816,716 to 818,131
_RS04285
MMP_RS04290: MMP_RS04290 - 4Fe-4S binding protein, at 818,140 to 819,333
_RS04290
Position (kb) 816
817
818
819 Strain fitness (log2 ratio) -2
-1
0
1
2 at 815.770 kb on + strand at 815.778 kb on + strand at 815.778 kb on + strand at 815.781 kb on + strand at 815.781 kb on + strand at 815.781 kb on + strand at 815.781 kb on + strand at 815.807 kb on + strand at 815.807 kb on + strand at 815.841 kb on - strand at 815.841 kb on - strand at 815.842 kb on + strand at 815.856 kb on - strand at 815.856 kb on - strand at 816.082 kb on + strand, within MMP_RS04280 at 816.121 kb on - strand, within MMP_RS04280 at 816.268 kb on + strand, within MMP_RS04280 at 816.310 kb on - strand, within MMP_RS04280 at 816.449 kb on + strand, within MMP_RS04280 at 816.472 kb on + strand, within MMP_RS04280 at 816.472 kb on + strand, within MMP_RS04280 at 816.472 kb on + strand, within MMP_RS04280 at 816.496 kb on - strand, within MMP_RS04280 at 816.520 kb on - strand, within MMP_RS04280 at 816.542 kb on + strand, within MMP_RS04280 at 816.570 kb on + strand, within MMP_RS04280 at 816.692 kb on - strand at 816.951 kb on - strand, within MMP_RS04285 at 817.135 kb on + strand, within MMP_RS04285 at 817.417 kb on - strand, within MMP_RS04285 at 817.417 kb on - strand, within MMP_RS04285 at 817.422 kb on + strand, within MMP_RS04285 at 817.527 kb on + strand, within MMP_RS04285 at 817.640 kb on - strand, within MMP_RS04285 at 817.644 kb on + strand, within MMP_RS04285 at 817.752 kb on - strand, within MMP_RS04285 at 817.752 kb on - strand, within MMP_RS04285 at 817.782 kb on - strand, within MMP_RS04285 at 817.968 kb on - strand, within MMP_RS04285 at 818.170 kb on + strand at 818.262 kb on + strand, within MMP_RS04290 at 818.301 kb on + strand, within MMP_RS04290 at 818.367 kb on - strand, within MMP_RS04290 at 818.506 kb on + strand, within MMP_RS04290 at 818.631 kb on - strand, within MMP_RS04290 at 818.674 kb on + strand, within MMP_RS04290 at 818.766 kb on - strand, within MMP_RS04290 at 818.850 kb on - strand, within MMP_RS04290 at 818.927 kb on - strand, within MMP_RS04290 at 818.972 kb on - strand, within MMP_RS04290 at 819.115 kb on + strand, within MMP_RS04290
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_H2_complete Antimycin A 0.01 mM remove 815,770 + +1.9 815,778 + -0.6 815,778 + -0.4 815,781 + +0.0 815,781 + +0.1 815,781 + -0.1 815,781 + -1.2 815,807 + +1.0 815,807 + +0.9 815,841 - -1.7 815,841 - +0.7 815,842 + +2.1 815,856 - +1.2 815,856 - -0.6 816,082 + MMP_RS04280 0.32 +0.3 816,121 - MMP_RS04280 0.36 -0.6 816,268 + MMP_RS04280 0.53 -2.3 816,310 - MMP_RS04280 0.57 +0.8 816,449 + MMP_RS04280 0.73 -1.1 816,472 + MMP_RS04280 0.75 +1.9 816,472 + MMP_RS04280 0.75 +1.3 816,472 + MMP_RS04280 0.75 +0.6 816,496 - MMP_RS04280 0.78 -0.6 816,520 - MMP_RS04280 0.81 +0.8 816,542 + MMP_RS04280 0.83 -0.1 816,570 + MMP_RS04280 0.86 -1.1 816,692 - +0.7 816,951 - MMP_RS04285 0.17 +0.3 817,135 + MMP_RS04285 0.30 -0.5 817,417 - MMP_RS04285 0.50 -0.5 817,417 - MMP_RS04285 0.50 -0.1 817,422 + MMP_RS04285 0.50 -1.5 817,527 + MMP_RS04285 0.57 -1.9 817,640 - MMP_RS04285 0.65 -2.3 817,644 + MMP_RS04285 0.66 +0.2 817,752 - MMP_RS04285 0.73 +1.0 817,752 - MMP_RS04285 0.73 -0.2 817,782 - MMP_RS04285 0.75 -1.8 817,968 - MMP_RS04285 0.88 -0.5 818,170 + +1.6 818,262 + MMP_RS04290 0.10 -0.7 818,301 + MMP_RS04290 0.13 -1.6 818,367 - MMP_RS04290 0.19 -2.2 818,506 + MMP_RS04290 0.31 +1.0 818,631 - MMP_RS04290 0.41 -1.6 818,674 + MMP_RS04290 0.45 -0.4 818,766 - MMP_RS04290 0.52 -0.3 818,850 - MMP_RS04290 0.59 -0.2 818,927 - MMP_RS04290 0.66 -1.7 818,972 - MMP_RS04290 0.70 +0.1 819,115 + MMP_RS04290 0.82 +0.1
Or see this region's nucleotide sequence