Experiment: McCas_H2_complete Antimycin A 0.01 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS04110 and MMP_RS04115 are separated by 615 nucleotides MMP_RS04115 and MMP_RS04120 are separated by 373 nucleotides
MMP_RS04110: MMP_RS04110 - methyl-accepting chemotaxis protein, at 778,782 to 780,980
_RS04110
MMP_RS04115: MMP_RS04115 - cytosine permease, at 781,596 to 782,831
_RS04115
MMP_RS04120: MMP_RS04120 - hypothetical protein, at 783,205 to 783,807
_RS04120
Position (kb) 781
782
783 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3
4 at 780.618 kb on + strand, within MMP_RS04110 at 780.637 kb on - strand, within MMP_RS04110 at 780.698 kb on + strand, within MMP_RS04110 at 780.731 kb on + strand, within MMP_RS04110 at 780.865 kb on - strand at 780.887 kb on + strand at 781.001 kb on - strand at 781.002 kb on + strand at 781.017 kb on - strand at 781.019 kb on - strand at 781.020 kb on + strand at 781.031 kb on - strand at 781.031 kb on - strand at 781.031 kb on - strand at 781.032 kb on + strand at 781.034 kb on - strand at 781.034 kb on - strand at 781.048 kb on - strand at 781.049 kb on + strand at 781.049 kb on + strand at 781.050 kb on - strand at 781.050 kb on - strand at 781.050 kb on - strand at 781.051 kb on + strand at 781.051 kb on + strand at 781.056 kb on - strand at 781.057 kb on + strand at 781.057 kb on + strand at 781.058 kb on - strand at 781.058 kb on - strand at 781.058 kb on - strand at 781.059 kb on + strand at 781.059 kb on + strand at 781.061 kb on + strand at 781.088 kb on - strand at 781.088 kb on - strand at 781.088 kb on - strand at 781.088 kb on - strand at 781.088 kb on - strand at 781.088 kb on - strand at 781.089 kb on + strand at 781.089 kb on + strand at 781.097 kb on - strand at 781.097 kb on - strand at 781.098 kb on + strand at 781.099 kb on - strand at 781.099 kb on - strand at 781.099 kb on - strand at 781.099 kb on - strand at 781.099 kb on - strand at 781.100 kb on + strand at 781.100 kb on + strand at 781.100 kb on + strand at 781.100 kb on + strand at 781.100 kb on + strand at 781.100 kb on + strand at 781.111 kb on + strand at 781.111 kb on + strand at 781.131 kb on - strand at 781.132 kb on + strand at 781.134 kb on + strand at 781.134 kb on + strand at 781.134 kb on + strand at 781.155 kb on + strand at 781.168 kb on - strand at 781.168 kb on - strand at 781.173 kb on + strand at 781.190 kb on - strand at 781.190 kb on - strand at 781.196 kb on - strand at 781.196 kb on - strand at 781.196 kb on - strand at 781.197 kb on + strand at 781.239 kb on + strand at 781.267 kb on - strand at 781.267 kb on - strand at 781.315 kb on - strand at 781.332 kb on + strand at 781.336 kb on + strand at 781.337 kb on - strand at 781.432 kb on + strand at 781.482 kb on - strand at 781.505 kb on - strand at 781.515 kb on - strand at 781.523 kb on + strand at 781.578 kb on + strand at 781.586 kb on + strand at 781.589 kb on + strand at 781.590 kb on - strand at 781.597 kb on - strand at 781.626 kb on - strand at 781.633 kb on - strand at 781.634 kb on + strand at 781.638 kb on + strand at 781.638 kb on + strand at 781.662 kb on - strand at 781.749 kb on + strand, within MMP_RS04115 at 781.768 kb on - strand, within MMP_RS04115 at 781.802 kb on - strand, within MMP_RS04115 at 781.802 kb on - strand, within MMP_RS04115 at 781.835 kb on - strand, within MMP_RS04115 at 781.835 kb on - strand, within MMP_RS04115 at 781.854 kb on - strand, within MMP_RS04115 at 781.855 kb on + strand, within MMP_RS04115 at 781.862 kb on - strand, within MMP_RS04115 at 781.868 kb on + strand, within MMP_RS04115 at 781.938 kb on + strand, within MMP_RS04115 at 781.998 kb on + strand, within MMP_RS04115 at 782.097 kb on - strand, within MMP_RS04115 at 782.314 kb on + strand, within MMP_RS04115 at 782.358 kb on + strand, within MMP_RS04115 at 782.361 kb on - strand, within MMP_RS04115 at 782.364 kb on - strand, within MMP_RS04115 at 782.365 kb on + strand, within MMP_RS04115 at 782.370 kb on + strand, within MMP_RS04115 at 782.390 kb on + strand, within MMP_RS04115 at 782.399 kb on - strand, within MMP_RS04115 at 782.400 kb on + strand, within MMP_RS04115 at 782.406 kb on - strand, within MMP_RS04115 at 782.427 kb on - strand, within MMP_RS04115 at 782.427 kb on - strand, within MMP_RS04115 at 782.428 kb on + strand, within MMP_RS04115 at 782.437 kb on + strand, within MMP_RS04115 at 782.536 kb on - strand, within MMP_RS04115 at 782.536 kb on - strand, within MMP_RS04115 at 782.605 kb on - strand, within MMP_RS04115 at 782.626 kb on + strand, within MMP_RS04115 at 782.637 kb on - strand, within MMP_RS04115 at 782.758 kb on + strand at 782.833 kb on + strand at 782.838 kb on + strand at 782.838 kb on + strand at 782.849 kb on + strand at 782.919 kb on - strand at 782.920 kb on + strand at 782.920 kb on + strand at 782.921 kb on - strand at 782.949 kb on + strand at 782.956 kb on + strand at 782.989 kb on + strand at 783.008 kb on + strand at 783.051 kb on - strand at 783.051 kb on - strand at 783.078 kb on + strand at 783.078 kb on + strand at 783.106 kb on + strand at 783.146 kb on - strand at 783.168 kb on + strand at 783.226 kb on + strand at 783.226 kb on + strand at 783.228 kb on + strand at 783.228 kb on + strand at 783.257 kb on - strand at 783.356 kb on - strand, within MMP_RS04120 at 783.418 kb on - strand, within MMP_RS04120 at 783.466 kb on - strand, within MMP_RS04120 at 783.512 kb on + strand, within MMP_RS04120 at 783.569 kb on + strand, within MMP_RS04120 at 783.667 kb on - strand, within MMP_RS04120 at 783.667 kb on - strand, within MMP_RS04120 at 783.668 kb on + strand, within MMP_RS04120 at 783.668 kb on + strand, within MMP_RS04120 at 783.668 kb on + strand, within MMP_RS04120 at 783.668 kb on + strand, within MMP_RS04120 at 783.671 kb on - strand, within MMP_RS04120 at 783.671 kb on - strand, within MMP_RS04120 at 783.678 kb on - strand, within MMP_RS04120 at 783.678 kb on - strand, within MMP_RS04120 at 783.679 kb on + strand, within MMP_RS04120 at 783.681 kb on - strand, within MMP_RS04120 at 783.687 kb on - strand, within MMP_RS04120 at 783.693 kb on + strand, within MMP_RS04120 at 783.717 kb on - strand, within MMP_RS04120 at 783.759 kb on - strand at 783.795 kb on - strand at 783.800 kb on - strand at 783.801 kb on + strand at 783.819 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_H2_complete Antimycin A 0.01 mM remove 780,618 + MMP_RS04110 0.83 +0.3 780,637 - MMP_RS04110 0.84 +0.6 780,698 + MMP_RS04110 0.87 +1.0 780,731 + MMP_RS04110 0.89 +0.8 780,865 - -0.4 780,887 + -0.1 781,001 - +0.2 781,002 + +0.5 781,017 - +0.1 781,019 - +0.6 781,020 + -2.3 781,031 - -0.5 781,031 - +3.8 781,031 - -0.8 781,032 + +0.5 781,034 - -2.0 781,034 - -2.2 781,048 - -0.5 781,049 + +0.4 781,049 + +0.3 781,050 - +0.1 781,050 - +1.2 781,050 - -0.9 781,051 + -2.2 781,051 + -0.7 781,056 - +0.9 781,057 + -0.7 781,057 + +0.7 781,058 - +1.5 781,058 - +0.0 781,058 - +0.5 781,059 + -0.6 781,059 + +1.9 781,061 + -0.6 781,088 - -0.9 781,088 - +0.5 781,088 - -0.1 781,088 - -0.7 781,088 - -1.5 781,088 - -0.3 781,089 + +0.2 781,089 + -0.2 781,097 - +1.6 781,097 - +0.8 781,098 + +0.9 781,099 - -0.5 781,099 - -2.3 781,099 - -0.8 781,099 - +0.1 781,099 - +1.0 781,100 + +0.5 781,100 + -0.6 781,100 + +0.1 781,100 + +0.0 781,100 + +0.8 781,100 + -0.2 781,111 + +2.2 781,111 + +0.5 781,131 - +0.1 781,132 + +1.2 781,134 + +2.6 781,134 + +1.0 781,134 + -0.1 781,155 + -0.3 781,168 - -0.5 781,168 - +0.0 781,173 + -0.6 781,190 - -0.8 781,190 - +1.0 781,196 - +1.0 781,196 - -3.4 781,196 - +0.5 781,197 + -0.8 781,239 + +1.8 781,267 - +0.8 781,267 - -1.4 781,315 - +1.3 781,332 + -1.5 781,336 + -0.6 781,337 - +0.1 781,432 + +2.4 781,482 - +0.3 781,505 - +1.3 781,515 - +1.0 781,523 + +0.3 781,578 + -1.1 781,586 + +1.6 781,589 + +0.2 781,590 - -1.1 781,597 - +0.4 781,626 - +0.6 781,633 - +1.4 781,634 + -0.1 781,638 + +0.8 781,638 + +0.3 781,662 - +0.0 781,749 + MMP_RS04115 0.12 +1.3 781,768 - MMP_RS04115 0.14 +1.2 781,802 - MMP_RS04115 0.17 +0.3 781,802 - MMP_RS04115 0.17 +0.4 781,835 - MMP_RS04115 0.19 -0.2 781,835 - MMP_RS04115 0.19 +0.4 781,854 - MMP_RS04115 0.21 +2.1 781,855 + MMP_RS04115 0.21 +0.4 781,862 - MMP_RS04115 0.22 +0.4 781,868 + MMP_RS04115 0.22 +0.4 781,938 + MMP_RS04115 0.28 +0.4 781,998 + MMP_RS04115 0.33 -1.3 782,097 - MMP_RS04115 0.41 -0.1 782,314 + MMP_RS04115 0.58 +1.1 782,358 + MMP_RS04115 0.62 -0.2 782,361 - MMP_RS04115 0.62 +1.8 782,364 - MMP_RS04115 0.62 -0.8 782,365 + MMP_RS04115 0.62 +0.5 782,370 + MMP_RS04115 0.63 +0.7 782,390 + MMP_RS04115 0.64 +1.7 782,399 - MMP_RS04115 0.65 -0.2 782,400 + MMP_RS04115 0.65 -0.9 782,406 - MMP_RS04115 0.66 +0.6 782,427 - MMP_RS04115 0.67 +0.4 782,427 - MMP_RS04115 0.67 +1.6 782,428 + MMP_RS04115 0.67 +0.2 782,437 + MMP_RS04115 0.68 +0.5 782,536 - MMP_RS04115 0.76 -0.2 782,536 - MMP_RS04115 0.76 -4.9 782,605 - MMP_RS04115 0.82 +0.7 782,626 + MMP_RS04115 0.83 +1.7 782,637 - MMP_RS04115 0.84 +0.1 782,758 + -0.0 782,833 + +0.5 782,838 + +1.5 782,838 + +0.2 782,849 + +0.1 782,919 - +1.1 782,920 + +0.5 782,920 + +1.0 782,921 - -1.0 782,949 + -0.5 782,956 + -1.4 782,989 + -0.7 783,008 + +0.6 783,051 - +0.3 783,051 - +1.1 783,078 + +0.9 783,078 + +3.1 783,106 + -2.4 783,146 - +0.0 783,168 + +0.4 783,226 + -1.3 783,226 + -0.0 783,228 + -0.9 783,228 + +0.7 783,257 - +1.6 783,356 - MMP_RS04120 0.25 -0.3 783,418 - MMP_RS04120 0.35 +1.8 783,466 - MMP_RS04120 0.43 +0.9 783,512 + MMP_RS04120 0.51 +0.8 783,569 + MMP_RS04120 0.60 -2.2 783,667 - MMP_RS04120 0.77 +1.6 783,667 - MMP_RS04120 0.77 -1.1 783,668 + MMP_RS04120 0.77 +0.3 783,668 + MMP_RS04120 0.77 +1.2 783,668 + MMP_RS04120 0.77 +1.0 783,668 + MMP_RS04120 0.77 -0.1 783,671 - MMP_RS04120 0.77 -0.6 783,671 - MMP_RS04120 0.77 -1.3 783,678 - MMP_RS04120 0.78 +1.0 783,678 - MMP_RS04120 0.78 +1.3 783,679 + MMP_RS04120 0.79 +0.5 783,681 - MMP_RS04120 0.79 +1.2 783,687 - MMP_RS04120 0.80 +1.2 783,693 + MMP_RS04120 0.81 -0.5 783,717 - MMP_RS04120 0.85 +1.5 783,759 - +0.6 783,795 - -0.8 783,800 - +2.3 783,801 + -1.3 783,819 + +0.3
Or see this region's nucleotide sequence