Experiment: McCas_H2_complete Antimycin A 0.01 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS04005 and MMP_RS04010 are separated by 360 nucleotides MMP_RS04010 and MMP_RS04015 are separated by 0 nucleotides MMP_RS04015 and MMP_RS04020 are separated by 11 nucleotides
MMP_RS04005: MMP_RS04005 - hypothetical protein, at 759,560 to 761,332
_RS04005
MMP_RS04010: MMP_RS04010 - ABC transporter substrate-binding protein, at 761,693 to 762,445
_RS04010
MMP_RS04015: MMP_RS04015 - hypothetical protein, at 762,446 to 762,937
_RS04015
MMP_RS04020: MMP_RS04020 - hypothetical protein, at 762,949 to 763,713
_RS04020
Position (kb) 761
762
763 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5 at 760.710 kb on - strand, within MMP_RS04005 at 760.711 kb on + strand, within MMP_RS04005 at 760.714 kb on - strand, within MMP_RS04005 at 760.715 kb on + strand, within MMP_RS04005 at 760.721 kb on - strand, within MMP_RS04005 at 760.746 kb on - strand, within MMP_RS04005 at 760.757 kb on - strand, within MMP_RS04005 at 760.819 kb on + strand, within MMP_RS04005 at 760.819 kb on + strand, within MMP_RS04005 at 760.870 kb on + strand, within MMP_RS04005 at 760.889 kb on + strand, within MMP_RS04005 at 760.893 kb on + strand, within MMP_RS04005 at 760.992 kb on + strand, within MMP_RS04005 at 761.051 kb on - strand, within MMP_RS04005 at 761.147 kb on - strand, within MMP_RS04005 at 761.147 kb on - strand, within MMP_RS04005 at 761.148 kb on + strand, within MMP_RS04005 at 761.148 kb on + strand, within MMP_RS04005 at 761.148 kb on + strand, within MMP_RS04005 at 761.168 kb on - strand at 761.195 kb on + strand at 761.235 kb on + strand at 761.235 kb on + strand at 761.238 kb on + strand at 761.244 kb on - strand at 761.257 kb on + strand at 761.321 kb on - strand at 761.322 kb on + strand at 761.355 kb on - strand at 761.355 kb on - strand at 761.355 kb on - strand at 761.356 kb on + strand at 761.356 kb on + strand at 761.419 kb on - strand at 761.419 kb on - strand at 761.420 kb on + strand at 761.442 kb on - strand at 761.443 kb on + strand at 761.479 kb on - strand at 761.483 kb on - strand at 761.520 kb on - strand at 761.520 kb on - strand at 761.520 kb on - strand at 761.521 kb on + strand at 761.522 kb on - strand at 761.522 kb on - strand at 761.523 kb on + strand at 761.523 kb on + strand at 761.537 kb on + strand at 761.540 kb on + strand at 761.552 kb on - strand at 761.560 kb on - strand at 761.561 kb on + strand at 761.562 kb on - strand at 761.562 kb on - strand at 761.562 kb on - strand at 761.563 kb on + strand at 761.563 kb on + strand at 761.591 kb on - strand at 761.593 kb on - strand at 761.593 kb on - strand at 761.594 kb on + strand at 761.600 kb on + strand at 761.601 kb on - strand at 761.601 kb on - strand at 761.601 kb on - strand at 761.601 kb on - strand at 761.601 kb on - strand at 761.602 kb on + strand at 761.602 kb on + strand at 761.602 kb on + strand at 761.602 kb on + strand at 761.602 kb on + strand at 761.605 kb on - strand at 761.605 kb on - strand at 761.606 kb on + strand at 761.606 kb on + strand at 761.632 kb on - strand at 761.633 kb on + strand at 761.633 kb on + strand at 761.642 kb on - strand at 761.642 kb on - strand at 761.642 kb on - strand at 761.642 kb on - strand at 761.642 kb on - strand at 761.643 kb on + strand at 761.643 kb on + strand at 761.644 kb on - strand at 761.644 kb on - strand at 761.645 kb on + strand at 761.645 kb on + strand at 761.646 kb on - strand at 761.689 kb on - strand at 761.690 kb on + strand at 761.803 kb on - strand, within MMP_RS04010 at 761.803 kb on - strand, within MMP_RS04010 at 761.812 kb on + strand, within MMP_RS04010 at 761.826 kb on + strand, within MMP_RS04010 at 761.828 kb on + strand, within MMP_RS04010 at 761.860 kb on + strand, within MMP_RS04010 at 761.860 kb on + strand, within MMP_RS04010 at 761.865 kb on - strand, within MMP_RS04010 at 761.866 kb on + strand, within MMP_RS04010 at 761.868 kb on - strand, within MMP_RS04010 at 761.869 kb on + strand, within MMP_RS04010 at 761.871 kb on + strand, within MMP_RS04010 at 761.895 kb on - strand, within MMP_RS04010 at 761.896 kb on + strand, within MMP_RS04010 at 761.913 kb on - strand, within MMP_RS04010 at 761.913 kb on - strand, within MMP_RS04010 at 761.970 kb on - strand, within MMP_RS04010 at 761.975 kb on - strand, within MMP_RS04010 at 761.976 kb on + strand, within MMP_RS04010 at 762.034 kb on - strand, within MMP_RS04010 at 762.038 kb on - strand, within MMP_RS04010 at 762.038 kb on - strand, within MMP_RS04010 at 762.038 kb on - strand, within MMP_RS04010 at 762.048 kb on - strand, within MMP_RS04010 at 762.068 kb on + strand, within MMP_RS04010 at 762.216 kb on - strand, within MMP_RS04010 at 762.250 kb on - strand, within MMP_RS04010 at 762.251 kb on + strand, within MMP_RS04010 at 762.253 kb on - strand, within MMP_RS04010 at 762.254 kb on + strand, within MMP_RS04010 at 762.263 kb on - strand, within MMP_RS04010 at 762.267 kb on - strand, within MMP_RS04010 at 762.268 kb on + strand, within MMP_RS04010 at 762.278 kb on - strand, within MMP_RS04010 at 762.278 kb on - strand, within MMP_RS04010 at 762.278 kb on - strand, within MMP_RS04010 at 762.323 kb on - strand, within MMP_RS04010 at 762.323 kb on - strand, within MMP_RS04010 at 762.346 kb on - strand, within MMP_RS04010 at 762.411 kb on - strand at 762.415 kb on - strand at 762.420 kb on - strand at 762.421 kb on + strand at 762.437 kb on + strand at 762.437 kb on + strand at 762.447 kb on - strand at 762.447 kb on - strand at 762.447 kb on - strand at 762.448 kb on + strand at 762.751 kb on - strand, within MMP_RS04015 at 762.824 kb on + strand, within MMP_RS04015 at 762.824 kb on + strand, within MMP_RS04015 at 762.950 kb on - strand at 763.085 kb on - strand, within MMP_RS04020 at 763.184 kb on + strand, within MMP_RS04020 at 763.224 kb on + strand, within MMP_RS04020 at 763.276 kb on - strand, within MMP_RS04020 at 763.280 kb on + strand, within MMP_RS04020 at 763.282 kb on + strand, within MMP_RS04020 at 763.373 kb on + strand, within MMP_RS04020
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_H2_complete Antimycin A 0.01 mM remove 760,710 - MMP_RS04005 0.65 +1.2 760,711 + MMP_RS04005 0.65 +0.8 760,714 - MMP_RS04005 0.65 +0.3 760,715 + MMP_RS04005 0.65 +0.9 760,721 - MMP_RS04005 0.65 +0.3 760,746 - MMP_RS04005 0.67 -0.7 760,757 - MMP_RS04005 0.68 +1.0 760,819 + MMP_RS04005 0.71 -0.0 760,819 + MMP_RS04005 0.71 -0.6 760,870 + MMP_RS04005 0.74 +0.0 760,889 + MMP_RS04005 0.75 +1.7 760,893 + MMP_RS04005 0.75 -0.2 760,992 + MMP_RS04005 0.81 +0.0 761,051 - MMP_RS04005 0.84 +1.3 761,147 - MMP_RS04005 0.90 +1.8 761,147 - MMP_RS04005 0.90 -1.7 761,148 + MMP_RS04005 0.90 +0.3 761,148 + MMP_RS04005 0.90 +0.1 761,148 + MMP_RS04005 0.90 -0.1 761,168 - +0.3 761,195 + -0.5 761,235 + +0.5 761,235 + +0.7 761,238 + +0.6 761,244 - -1.5 761,257 + -0.6 761,321 - -0.7 761,322 + +0.4 761,355 - -1.2 761,355 - +1.0 761,355 - +0.2 761,356 + +0.1 761,356 + -0.2 761,419 - +0.8 761,419 - +0.3 761,420 + -0.6 761,442 - +0.1 761,443 + -0.5 761,479 - -2.7 761,483 - +0.8 761,520 - +0.9 761,520 - +0.7 761,520 - +0.2 761,521 + -0.5 761,522 - +0.3 761,522 - +1.6 761,523 + +0.5 761,523 + +1.2 761,537 + -2.4 761,540 + +1.3 761,552 - -0.8 761,560 - +0.9 761,561 + -0.6 761,562 - -1.2 761,562 - +0.6 761,562 - -1.0 761,563 + -0.8 761,563 + +0.8 761,591 - -0.6 761,593 - -0.0 761,593 - +1.7 761,594 + -1.6 761,600 + +0.3 761,601 - +0.7 761,601 - -1.0 761,601 - +0.4 761,601 - +0.4 761,601 - -2.6 761,602 + +0.0 761,602 + +1.0 761,602 + +0.5 761,602 + -2.3 761,602 + +1.4 761,605 - -0.2 761,605 - -0.6 761,606 + -0.1 761,606 + +0.3 761,632 - +1.8 761,633 + -0.5 761,633 + +0.6 761,642 - +0.6 761,642 - -1.8 761,642 - +1.4 761,642 - +0.3 761,642 - +0.7 761,643 + +0.5 761,643 + +0.0 761,644 - +0.9 761,644 - +0.9 761,645 + -0.6 761,645 + -2.0 761,646 - +1.3 761,689 - -1.3 761,690 + +0.1 761,803 - MMP_RS04010 0.15 -0.1 761,803 - MMP_RS04010 0.15 -2.1 761,812 + MMP_RS04010 0.16 +1.4 761,826 + MMP_RS04010 0.18 +0.5 761,828 + MMP_RS04010 0.18 +0.2 761,860 + MMP_RS04010 0.22 +0.9 761,860 + MMP_RS04010 0.22 +0.6 761,865 - MMP_RS04010 0.23 +1.0 761,866 + MMP_RS04010 0.23 +0.7 761,868 - MMP_RS04010 0.23 +1.4 761,869 + MMP_RS04010 0.23 +0.7 761,871 + MMP_RS04010 0.24 -0.4 761,895 - MMP_RS04010 0.27 +0.4 761,896 + MMP_RS04010 0.27 +0.2 761,913 - MMP_RS04010 0.29 -2.1 761,913 - MMP_RS04010 0.29 +0.6 761,970 - MMP_RS04010 0.37 +0.4 761,975 - MMP_RS04010 0.37 +0.1 761,976 + MMP_RS04010 0.38 +0.2 762,034 - MMP_RS04010 0.45 +1.2 762,038 - MMP_RS04010 0.46 +0.5 762,038 - MMP_RS04010 0.46 -1.0 762,038 - MMP_RS04010 0.46 +0.7 762,048 - MMP_RS04010 0.47 +0.6 762,068 + MMP_RS04010 0.50 +1.9 762,216 - MMP_RS04010 0.69 +0.6 762,250 - MMP_RS04010 0.74 +0.1 762,251 + MMP_RS04010 0.74 +1.0 762,253 - MMP_RS04010 0.74 -0.1 762,254 + MMP_RS04010 0.75 +2.0 762,263 - MMP_RS04010 0.76 +1.4 762,267 - MMP_RS04010 0.76 +0.1 762,268 + MMP_RS04010 0.76 +0.1 762,278 - MMP_RS04010 0.78 +1.3 762,278 - MMP_RS04010 0.78 -1.4 762,278 - MMP_RS04010 0.78 +0.3 762,323 - MMP_RS04010 0.84 -0.5 762,323 - MMP_RS04010 0.84 +4.9 762,346 - MMP_RS04010 0.87 +1.2 762,411 - +1.4 762,415 - -1.3 762,420 - +1.5 762,421 + -0.9 762,437 + -1.8 762,437 + +0.6 762,447 - +0.8 762,447 - +1.3 762,447 - -0.1 762,448 + -0.7 762,751 - MMP_RS04015 0.62 -1.9 762,824 + MMP_RS04015 0.77 +3.5 762,824 + MMP_RS04015 0.77 +0.8 762,950 - +0.7 763,085 - MMP_RS04020 0.18 +0.9 763,184 + MMP_RS04020 0.31 -0.6 763,224 + MMP_RS04020 0.36 -0.3 763,276 - MMP_RS04020 0.43 -1.8 763,280 + MMP_RS04020 0.43 +0.1 763,282 + MMP_RS04020 0.44 -0.9 763,373 + MMP_RS04020 0.55 +1.1
Or see this region's nucleotide sequence