Strain Fitness in Methanococcus maripaludis S2 around MMP_RS04000

Experiment: McCas_H2_complete Antimycin A 0.01 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS03995 and MMP_RS04000 are separated by 7 nucleotidesMMP_RS04000 and MMP_RS04005 are separated by 11 nucleotides MMP_RS03995: MMP_RS03995 - flippase-like domain-containing protein, at 757,172 to 758,122 _RS03995 MMP_RS04000: MMP_RS04000 - NAD(P)/FAD-dependent oxidoreductase, at 758,130 to 759,548 _RS04000 MMP_RS04005: MMP_RS04005 - hypothetical protein, at 759,560 to 761,332 _RS04005 Position (kb) 758 759 760Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 757.166 kb on + strandat 757.166 kb on + strandat 757.226 kb on + strandat 757.374 kb on + strand, within MMP_RS03995at 757.374 kb on + strand, within MMP_RS03995at 757.399 kb on - strand, within MMP_RS03995at 757.434 kb on - strand, within MMP_RS03995at 757.434 kb on - strand, within MMP_RS03995at 757.434 kb on - strand, within MMP_RS03995at 757.435 kb on + strand, within MMP_RS03995at 757.435 kb on + strand, within MMP_RS03995at 757.435 kb on + strand, within MMP_RS03995at 757.441 kb on - strand, within MMP_RS03995at 757.555 kb on - strand, within MMP_RS03995at 757.616 kb on - strand, within MMP_RS03995at 757.671 kb on + strand, within MMP_RS03995at 757.672 kb on - strand, within MMP_RS03995at 757.673 kb on + strand, within MMP_RS03995at 757.727 kb on - strand, within MMP_RS03995at 757.797 kb on + strand, within MMP_RS03995at 758.006 kb on + strand, within MMP_RS03995at 758.012 kb on - strand, within MMP_RS03995at 758.023 kb on + strand, within MMP_RS03995at 758.055 kb on + strandat 758.082 kb on - strandat 758.083 kb on + strandat 758.083 kb on + strandat 758.194 kb on - strandat 758.239 kb on - strandat 758.240 kb on + strandat 758.261 kb on - strandat 758.261 kb on - strandat 758.261 kb on - strandat 758.262 kb on + strandat 758.313 kb on - strand, within MMP_RS04000at 758.317 kb on - strand, within MMP_RS04000at 758.334 kb on - strand, within MMP_RS04000at 758.481 kb on + strand, within MMP_RS04000at 758.575 kb on + strand, within MMP_RS04000at 758.614 kb on - strand, within MMP_RS04000at 758.614 kb on - strand, within MMP_RS04000at 758.614 kb on - strand, within MMP_RS04000at 758.615 kb on + strand, within MMP_RS04000at 758.641 kb on + strand, within MMP_RS04000at 758.646 kb on + strand, within MMP_RS04000at 758.646 kb on + strand, within MMP_RS04000at 758.655 kb on - strand, within MMP_RS04000at 758.828 kb on - strand, within MMP_RS04000at 758.829 kb on + strand, within MMP_RS04000at 758.835 kb on + strand, within MMP_RS04000at 758.841 kb on - strand, within MMP_RS04000at 758.844 kb on + strand, within MMP_RS04000at 758.903 kb on + strand, within MMP_RS04000at 759.082 kb on - strand, within MMP_RS04000at 759.083 kb on + strand, within MMP_RS04000at 759.083 kb on + strand, within MMP_RS04000at 759.103 kb on - strand, within MMP_RS04000at 759.103 kb on - strand, within MMP_RS04000at 759.126 kb on + strand, within MMP_RS04000at 759.147 kb on - strand, within MMP_RS04000at 759.178 kb on + strand, within MMP_RS04000at 759.179 kb on - strand, within MMP_RS04000at 759.237 kb on - strand, within MMP_RS04000at 759.238 kb on + strand, within MMP_RS04000at 759.272 kb on + strand, within MMP_RS04000at 759.274 kb on - strand, within MMP_RS04000at 759.274 kb on - strand, within MMP_RS04000at 759.275 kb on + strand, within MMP_RS04000at 759.276 kb on - strand, within MMP_RS04000at 759.277 kb on + strand, within MMP_RS04000at 759.277 kb on + strand, within MMP_RS04000at 759.316 kb on + strand, within MMP_RS04000at 759.340 kb on + strand, within MMP_RS04000at 759.349 kb on + strand, within MMP_RS04000at 759.417 kb on + strandat 759.447 kb on - strandat 759.458 kb on + strandat 759.485 kb on - strandat 759.490 kb on + strandat 759.568 kb on - strandat 759.573 kb on + strandat 759.701 kb on - strandat 759.840 kb on + strand, within MMP_RS04005at 759.841 kb on - strand, within MMP_RS04005at 759.841 kb on - strand, within MMP_RS04005at 759.860 kb on + strand, within MMP_RS04005at 759.882 kb on - strand, within MMP_RS04005at 759.887 kb on + strand, within MMP_RS04005at 759.933 kb on - strand, within MMP_RS04005at 759.974 kb on - strand, within MMP_RS04005at 759.974 kb on - strand, within MMP_RS04005at 759.974 kb on - strand, within MMP_RS04005at 759.975 kb on + strand, within MMP_RS04005at 759.975 kb on + strand, within MMP_RS04005at 759.975 kb on + strand, within MMP_RS04005at 760.013 kb on + strand, within MMP_RS04005at 760.015 kb on - strand, within MMP_RS04005at 760.015 kb on - strand, within MMP_RS04005at 760.058 kb on - strand, within MMP_RS04005at 760.058 kb on - strand, within MMP_RS04005at 760.058 kb on - strand, within MMP_RS04005at 760.059 kb on + strand, within MMP_RS04005at 760.066 kb on - strand, within MMP_RS04005at 760.066 kb on - strand, within MMP_RS04005at 760.068 kb on - strand, within MMP_RS04005at 760.170 kb on + strand, within MMP_RS04005at 760.210 kb on + strand, within MMP_RS04005at 760.231 kb on + strand, within MMP_RS04005at 760.323 kb on + strand, within MMP_RS04005at 760.330 kb on - strand, within MMP_RS04005at 760.331 kb on + strand, within MMP_RS04005at 760.384 kb on - strand, within MMP_RS04005at 760.417 kb on - strand, within MMP_RS04005at 760.418 kb on + strand, within MMP_RS04005at 760.435 kb on + strand, within MMP_RS04005at 760.435 kb on + strand, within MMP_RS04005at 760.485 kb on - strand, within MMP_RS04005at 760.486 kb on + strand, within MMP_RS04005at 760.486 kb on + strand, within MMP_RS04005

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Per-strain Table

Position Strand Gene LocusTag Fraction McCas_H2_complete Antimycin A 0.01 mM
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757,166 + -0.2
757,166 + +0.3
757,226 + -1.9
757,374 + MMP_RS03995 0.21 +0.4
757,374 + MMP_RS03995 0.21 +0.6
757,399 - MMP_RS03995 0.24 +0.8
757,434 - MMP_RS03995 0.28 +0.6
757,434 - MMP_RS03995 0.28 -0.7
757,434 - MMP_RS03995 0.28 +0.8
757,435 + MMP_RS03995 0.28 +0.2
757,435 + MMP_RS03995 0.28 -0.9
757,435 + MMP_RS03995 0.28 +0.1
757,441 - MMP_RS03995 0.28 +2.4
757,555 - MMP_RS03995 0.40 -1.4
757,616 - MMP_RS03995 0.47 +0.6
757,671 + MMP_RS03995 0.52 -0.1
757,672 - MMP_RS03995 0.53 +0.0
757,673 + MMP_RS03995 0.53 -0.1
757,727 - MMP_RS03995 0.58 -0.3
757,797 + MMP_RS03995 0.66 +0.9
758,006 + MMP_RS03995 0.88 +1.8
758,012 - MMP_RS03995 0.88 +0.1
758,023 + MMP_RS03995 0.89 +0.6
758,055 + +0.3
758,082 - -0.2
758,083 + +0.1
758,083 + -0.7
758,194 - +1.3
758,239 - +2.8
758,240 + +1.0
758,261 - +0.5
758,261 - +2.0
758,261 - +0.1
758,262 + +2.3
758,313 - MMP_RS04000 0.13 +1.4
758,317 - MMP_RS04000 0.13 -0.0
758,334 - MMP_RS04000 0.14 +0.5
758,481 + MMP_RS04000 0.25 +1.7
758,575 + MMP_RS04000 0.31 +0.8
758,614 - MMP_RS04000 0.34 +1.0
758,614 - MMP_RS04000 0.34 -0.9
758,614 - MMP_RS04000 0.34 +1.5
758,615 + MMP_RS04000 0.34 -0.1
758,641 + MMP_RS04000 0.36 +1.0
758,646 + MMP_RS04000 0.36 +2.1
758,646 + MMP_RS04000 0.36 -2.4
758,655 - MMP_RS04000 0.37 +1.1
758,828 - MMP_RS04000 0.49 -0.6
758,829 + MMP_RS04000 0.49 -0.4
758,835 + MMP_RS04000 0.50 -0.1
758,841 - MMP_RS04000 0.50 -0.8
758,844 + MMP_RS04000 0.50 +0.7
758,903 + MMP_RS04000 0.54 +1.5
759,082 - MMP_RS04000 0.67 -0.1
759,083 + MMP_RS04000 0.67 +0.6
759,083 + MMP_RS04000 0.67 -0.4
759,103 - MMP_RS04000 0.69 -0.9
759,103 - MMP_RS04000 0.69 +0.5
759,126 + MMP_RS04000 0.70 +0.4
759,147 - MMP_RS04000 0.72 +1.4
759,178 + MMP_RS04000 0.74 +1.5
759,179 - MMP_RS04000 0.74 -0.1
759,237 - MMP_RS04000 0.78 +0.6
759,238 + MMP_RS04000 0.78 +1.0
759,272 + MMP_RS04000 0.80 +0.3
759,274 - MMP_RS04000 0.81 +0.0
759,274 - MMP_RS04000 0.81 +0.7
759,275 + MMP_RS04000 0.81 -0.1
759,276 - MMP_RS04000 0.81 +0.8
759,277 + MMP_RS04000 0.81 +1.1
759,277 + MMP_RS04000 0.81 +0.1
759,316 + MMP_RS04000 0.84 +0.8
759,340 + MMP_RS04000 0.85 +0.4
759,349 + MMP_RS04000 0.86 +2.7
759,417 + +0.7
759,447 - +0.2
759,458 + +1.3
759,485 - +0.4
759,490 + +0.4
759,568 - +0.5
759,573 + +1.7
759,701 - +1.2
759,840 + MMP_RS04005 0.16 -0.3
759,841 - MMP_RS04005 0.16 +0.1
759,841 - MMP_RS04005 0.16 +0.7
759,860 + MMP_RS04005 0.17 -2.0
759,882 - MMP_RS04005 0.18 -0.2
759,887 + MMP_RS04005 0.18 +2.7
759,933 - MMP_RS04005 0.21 +0.2
759,974 - MMP_RS04005 0.23 -0.5
759,974 - MMP_RS04005 0.23 +1.4
759,974 - MMP_RS04005 0.23 -0.9
759,975 + MMP_RS04005 0.23 -3.4
759,975 + MMP_RS04005 0.23 +0.9
759,975 + MMP_RS04005 0.23 +0.1
760,013 + MMP_RS04005 0.26 +0.6
760,015 - MMP_RS04005 0.26 -0.0
760,015 - MMP_RS04005 0.26 -1.4
760,058 - MMP_RS04005 0.28 -0.5
760,058 - MMP_RS04005 0.28 -2.5
760,058 - MMP_RS04005 0.28 +0.9
760,059 + MMP_RS04005 0.28 +0.5
760,066 - MMP_RS04005 0.29 -0.0
760,066 - MMP_RS04005 0.29 +1.6
760,068 - MMP_RS04005 0.29 +1.6
760,170 + MMP_RS04005 0.34 +0.3
760,210 + MMP_RS04005 0.37 -1.0
760,231 + MMP_RS04005 0.38 +0.1
760,323 + MMP_RS04005 0.43 -0.4
760,330 - MMP_RS04005 0.43 -1.4
760,331 + MMP_RS04005 0.43 -0.2
760,384 - MMP_RS04005 0.46 +1.2
760,417 - MMP_RS04005 0.48 +1.2
760,418 + MMP_RS04005 0.48 +0.2
760,435 + MMP_RS04005 0.49 +1.3
760,435 + MMP_RS04005 0.49 -0.3
760,485 - MMP_RS04005 0.52 -0.5
760,486 + MMP_RS04005 0.52 -0.3
760,486 + MMP_RS04005 0.52 +0.1

Or see this region's nucleotide sequence