Experiment: McCas_H2_complete Antimycin A 0.01 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS03945 and MMP_RS03950 are separated by 2 nucleotides MMP_RS03950 and MMP_RS03955 are separated by 19 nucleotides MMP_RS03955 and MMP_RS03960 are separated by 196 nucleotides MMP_RS03960 and MMP_RS03965 are separated by 168 nucleotides
MMP_RS03945: MMP_RS03945 - nucleoside triphosphate pyrophosphohydrolase, at 749,567 to 749,875
_RS03945
MMP_RS03950: MMP_RS03950 - HNH endonuclease, at 749,878 to 750,849
_RS03950
MMP_RS03955: MMP_RS03955 - DUF3578 domain-containing protein, at 750,869 to 752,053
_RS03955
MMP_RS03960: MMP_RS03960 - hypothetical protein, at 752,250 to 752,480
_RS03960
MMP_RS03965: MMP_RS03965 - hypothetical protein, at 752,649 to 753,023
_RS03965
Position (kb) 750
751
752
753 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1
2
3
4 at 749.876 kb on + strand at 749.876 kb on + strand at 749.908 kb on + strand at 749.913 kb on + strand at 749.913 kb on + strand at 749.935 kb on - strand at 749.936 kb on + strand at 750.102 kb on + strand, within MMP_RS03950 at 750.105 kb on - strand, within MMP_RS03950 at 750.193 kb on + strand, within MMP_RS03950 at 750.200 kb on + strand, within MMP_RS03950 at 750.269 kb on + strand, within MMP_RS03950 at 750.582 kb on + strand, within MMP_RS03950 at 750.584 kb on - strand, within MMP_RS03950 at 750.608 kb on - strand, within MMP_RS03950 at 750.662 kb on - strand, within MMP_RS03950 at 750.694 kb on - strand, within MMP_RS03950 at 750.695 kb on + strand, within MMP_RS03950 at 750.816 kb on - strand at 750.883 kb on + strand at 750.883 kb on + strand at 750.930 kb on + strand at 750.937 kb on + strand at 750.981 kb on - strand at 750.981 kb on - strand at 750.982 kb on + strand at 750.983 kb on - strand at 750.983 kb on - strand at 750.983 kb on - strand at 750.990 kb on - strand, within MMP_RS03955 at 750.991 kb on + strand, within MMP_RS03955 at 751.083 kb on - strand, within MMP_RS03955 at 751.083 kb on - strand, within MMP_RS03955 at 751.084 kb on + strand, within MMP_RS03955 at 751.084 kb on + strand, within MMP_RS03955 at 751.084 kb on + strand, within MMP_RS03955 at 751.161 kb on + strand, within MMP_RS03955 at 751.205 kb on - strand, within MMP_RS03955 at 751.218 kb on - strand, within MMP_RS03955 at 751.253 kb on + strand, within MMP_RS03955 at 751.253 kb on + strand, within MMP_RS03955 at 751.427 kb on - strand, within MMP_RS03955 at 751.427 kb on - strand, within MMP_RS03955 at 751.427 kb on - strand, within MMP_RS03955 at 751.670 kb on + strand, within MMP_RS03955 at 751.761 kb on - strand, within MMP_RS03955 at 751.799 kb on + strand, within MMP_RS03955 at 751.801 kb on + strand, within MMP_RS03955 at 751.801 kb on + strand, within MMP_RS03955 at 751.801 kb on + strand, within MMP_RS03955 at 751.801 kb on + strand, within MMP_RS03955 at 751.842 kb on + strand, within MMP_RS03955 at 751.842 kb on + strand, within MMP_RS03955 at 751.953 kb on + strand at 752.006 kb on + strand at 752.006 kb on + strand at 752.007 kb on - strand at 752.016 kb on + strand at 752.039 kb on - strand at 752.039 kb on - strand at 752.039 kb on - strand at 752.071 kb on + strand at 752.090 kb on - strand at 752.098 kb on - strand at 752.099 kb on + strand at 752.101 kb on - strand at 752.101 kb on - strand at 752.102 kb on + strand at 752.169 kb on + strand at 752.171 kb on - strand at 752.172 kb on + strand at 752.178 kb on + strand at 752.236 kb on - strand at 752.376 kb on - strand, within MMP_RS03960 at 752.526 kb on + strand at 752.528 kb on - strand at 752.531 kb on - strand at 752.534 kb on - strand at 752.535 kb on + strand at 752.776 kb on - strand, within MMP_RS03965 at 752.987 kb on - strand at 752.987 kb on - strand at 752.998 kb on + strand at 753.012 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_H2_complete Antimycin A 0.01 mM remove 749,876 + +0.0 749,876 + +1.9 749,908 + -0.5 749,913 + -0.1 749,913 + -0.6 749,935 - -0.8 749,936 + +0.5 750,102 + MMP_RS03950 0.23 +0.1 750,105 - MMP_RS03950 0.23 -0.4 750,193 + MMP_RS03950 0.32 -1.6 750,200 + MMP_RS03950 0.33 +0.8 750,269 + MMP_RS03950 0.40 +0.5 750,582 + MMP_RS03950 0.72 +1.3 750,584 - MMP_RS03950 0.73 +0.8 750,608 - MMP_RS03950 0.75 +0.3 750,662 - MMP_RS03950 0.81 -0.4 750,694 - MMP_RS03950 0.84 -0.5 750,695 + MMP_RS03950 0.84 -0.1 750,816 - +4.0 750,883 + +1.2 750,883 + -1.7 750,930 + +1.3 750,937 + -1.8 750,981 - -0.5 750,981 - +0.2 750,982 + +0.3 750,983 - +0.4 750,983 - -2.7 750,983 - -0.0 750,990 - MMP_RS03955 0.10 +2.6 750,991 + MMP_RS03955 0.10 +0.2 751,083 - MMP_RS03955 0.18 -0.6 751,083 - MMP_RS03955 0.18 +3.0 751,084 + MMP_RS03955 0.18 +0.4 751,084 + MMP_RS03955 0.18 +0.6 751,084 + MMP_RS03955 0.18 +0.2 751,161 + MMP_RS03955 0.25 +0.1 751,205 - MMP_RS03955 0.28 -0.6 751,218 - MMP_RS03955 0.29 +0.1 751,253 + MMP_RS03955 0.32 -0.2 751,253 + MMP_RS03955 0.32 -0.3 751,427 - MMP_RS03955 0.47 +0.5 751,427 - MMP_RS03955 0.47 -0.4 751,427 - MMP_RS03955 0.47 +1.7 751,670 + MMP_RS03955 0.68 +1.2 751,761 - MMP_RS03955 0.75 +1.9 751,799 + MMP_RS03955 0.78 +1.1 751,801 + MMP_RS03955 0.79 +0.6 751,801 + MMP_RS03955 0.79 +1.0 751,801 + MMP_RS03955 0.79 +1.1 751,801 + MMP_RS03955 0.79 +1.6 751,842 + MMP_RS03955 0.82 -0.7 751,842 + MMP_RS03955 0.82 -0.2 751,953 + +2.3 752,006 + -0.7 752,006 + -0.9 752,007 - +1.1 752,016 + +0.3 752,039 - +1.8 752,039 - +2.0 752,039 - -2.9 752,071 + -1.4 752,090 - +1.3 752,098 - +0.1 752,099 + -1.0 752,101 - +0.4 752,101 - -2.1 752,102 + +1.1 752,169 + -1.2 752,171 - +0.5 752,172 + +0.5 752,178 + +0.0 752,236 - -2.9 752,376 - MMP_RS03960 0.55 -0.3 752,526 + -2.8 752,528 - -4.7 752,531 - -2.0 752,534 - -6.1 752,535 + -1.0 752,776 - MMP_RS03965 0.34 +0.5 752,987 - -0.4 752,987 - -0.1 752,998 + +0.8 753,012 - -0.2
Or see this region's nucleotide sequence