Experiment: McCas_H2_complete Antimycin A 0.01 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS03815 and MMP_RS03820 are separated by 125 nucleotides MMP_RS03820 and MMP_RS03825 are separated by 9 nucleotides MMP_RS03825 and MMP_RS03830 are separated by 22 nucleotides MMP_RS03830 and MMP_RS03835 are separated by 106 nucleotides
MMP_RS03815: MMP_RS03815 - excinuclease ABC subunit UvrA, at 721,032 to 723,887
_RS03815
MMP_RS03820: MMP_RS03820 - EamA family transporter, at 724,013 to 724,432
_RS03820
MMP_RS03825: MMP_RS03825 - exodeoxyribonuclease VII small subunit, at 724,442 to 724,645
_RS03825
MMP_RS03830: MMP_RS03830 - exodeoxyribonuclease VII large subunit, at 724,668 to 725,891
_RS03830
MMP_RS03835: MMP_RS03835 - MATE family efflux transporter, at 725,998 to 727,350
_RS03835
Position (kb) 724
725
726 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 723.680 kb on - strand at 723.710 kb on + strand at 723.730 kb on - strand at 723.730 kb on - strand at 723.815 kb on - strand at 723.870 kb on - strand at 723.870 kb on - strand at 723.891 kb on - strand at 723.903 kb on - strand at 723.921 kb on - strand at 723.922 kb on + strand at 723.930 kb on + strand at 723.935 kb on - strand at 723.946 kb on + strand at 723.985 kb on - strand at 724.014 kb on - strand at 724.094 kb on - strand, within MMP_RS03820 at 724.110 kb on + strand, within MMP_RS03820 at 724.223 kb on - strand, within MMP_RS03820 at 724.228 kb on + strand, within MMP_RS03820 at 724.262 kb on - strand, within MMP_RS03820 at 724.263 kb on + strand, within MMP_RS03820 at 724.280 kb on - strand, within MMP_RS03820 at 724.288 kb on - strand, within MMP_RS03820 at 724.289 kb on + strand, within MMP_RS03820 at 724.289 kb on + strand, within MMP_RS03820 at 724.323 kb on - strand, within MMP_RS03820 at 724.333 kb on - strand, within MMP_RS03820 at 724.334 kb on + strand, within MMP_RS03820 at 724.392 kb on + strand at 724.682 kb on - strand at 724.686 kb on + strand at 724.686 kb on + strand at 724.686 kb on + strand at 724.715 kb on - strand at 724.758 kb on - strand at 724.759 kb on + strand at 724.806 kb on - strand, within MMP_RS03830 at 724.820 kb on - strand, within MMP_RS03830 at 725.072 kb on + strand, within MMP_RS03830 at 725.080 kb on - strand, within MMP_RS03830 at 725.081 kb on + strand, within MMP_RS03830 at 725.081 kb on + strand, within MMP_RS03830 at 725.081 kb on + strand, within MMP_RS03830 at 725.083 kb on + strand, within MMP_RS03830 at 725.122 kb on + strand, within MMP_RS03830 at 725.545 kb on + strand, within MMP_RS03830 at 725.576 kb on - strand, within MMP_RS03830 at 725.635 kb on + strand, within MMP_RS03830 at 725.938 kb on - strand at 725.952 kb on - strand at 725.952 kb on - strand at 725.954 kb on - strand at 726.018 kb on + strand at 726.051 kb on + strand at 726.057 kb on - strand at 726.060 kb on - strand at 726.064 kb on + strand at 726.101 kb on + strand at 726.119 kb on - strand at 726.122 kb on + strand at 726.135 kb on - strand, within MMP_RS03835 at 726.136 kb on + strand, within MMP_RS03835 at 726.376 kb on - strand, within MMP_RS03835 at 726.446 kb on - strand, within MMP_RS03835 at 726.485 kb on - strand, within MMP_RS03835 at 726.494 kb on - strand, within MMP_RS03835 at 726.513 kb on + strand, within MMP_RS03835 at 726.719 kb on + strand, within MMP_RS03835 at 726.725 kb on + strand, within MMP_RS03835
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_H2_complete Antimycin A 0.01 mM remove 723,680 - +1.6 723,710 + -0.1 723,730 - +1.0 723,730 - +1.2 723,815 - -0.1 723,870 - +1.7 723,870 - -0.3 723,891 - +1.3 723,903 - -0.2 723,921 - -1.4 723,922 + -0.2 723,930 + +0.3 723,935 - +1.3 723,946 + +1.2 723,985 - -0.6 724,014 - +0.7 724,094 - MMP_RS03820 0.19 +0.2 724,110 + MMP_RS03820 0.23 -0.5 724,223 - MMP_RS03820 0.50 +0.2 724,228 + MMP_RS03820 0.51 +0.3 724,262 - MMP_RS03820 0.59 +0.6 724,263 + MMP_RS03820 0.60 -0.4 724,280 - MMP_RS03820 0.64 -0.1 724,288 - MMP_RS03820 0.65 +0.7 724,289 + MMP_RS03820 0.66 -0.9 724,289 + MMP_RS03820 0.66 -0.7 724,323 - MMP_RS03820 0.74 -1.7 724,333 - MMP_RS03820 0.76 +1.2 724,334 + MMP_RS03820 0.76 +0.6 724,392 + -0.7 724,682 - +1.1 724,686 + -0.1 724,686 + +0.5 724,686 + -0.4 724,715 - +1.0 724,758 - +2.3 724,759 + -1.2 724,806 - MMP_RS03830 0.11 -0.9 724,820 - MMP_RS03830 0.12 -0.8 725,072 + MMP_RS03830 0.33 -0.4 725,080 - MMP_RS03830 0.34 -0.1 725,081 + MMP_RS03830 0.34 +1.2 725,081 + MMP_RS03830 0.34 -0.5 725,081 + MMP_RS03830 0.34 -0.6 725,083 + MMP_RS03830 0.34 -0.0 725,122 + MMP_RS03830 0.37 -0.7 725,545 + MMP_RS03830 0.72 -4.7 725,576 - MMP_RS03830 0.74 -0.3 725,635 + MMP_RS03830 0.79 +0.1 725,938 - +1.4 725,952 - +0.9 725,952 - +0.1 725,954 - -0.1 726,018 + +0.6 726,051 + +2.0 726,057 - +0.7 726,060 - -0.2 726,064 + +1.9 726,101 + -1.3 726,119 - -4.4 726,122 + +0.4 726,135 - MMP_RS03835 0.10 -0.2 726,136 + MMP_RS03835 0.10 +1.8 726,376 - MMP_RS03835 0.28 -1.6 726,446 - MMP_RS03835 0.33 -0.5 726,485 - MMP_RS03835 0.36 -3.8 726,494 - MMP_RS03835 0.37 +1.2 726,513 + MMP_RS03835 0.38 +0.4 726,719 + MMP_RS03835 0.53 -0.9 726,725 + MMP_RS03835 0.54 -0.5
Or see this region's nucleotide sequence