Experiment: McCas_H2_complete Antimycin A 0.01 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS03505 and MMP_RS03510 are separated by 12 nucleotides MMP_RS03510 and MMP_RS03515 are separated by 85 nucleotides MMP_RS03515 and MMP_RS03520 are separated by 9 nucleotides MMP_RS03520 and MMP_RS03525 are separated by 102 nucleotides
MMP_RS03505: MMP_RS03505 - hypothetical protein, at 657,825 to 658,433
_RS03505
MMP_RS03510: MMP_RS03510 - 30S ribosomal protein S3ae, at 658,446 to 659,123
_RS03510
MMP_RS03515: MMP_RS03515 - DMT family transporter, at 659,209 to 660,099
_RS03515
MMP_RS03520: MMP_RS03520 - YwbE family protein, at 660,109 to 660,303
_RS03520
MMP_RS03525: MMP_RS03525 - ketopantoate reductase family protein, at 660,406 to 661,326
_RS03525
Position (kb) 659
660
661 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1
2 at 659.033 kb on - strand at 659.093 kb on + strand at 659.277 kb on + strand at 659.301 kb on - strand, within MMP_RS03515 at 659.302 kb on + strand, within MMP_RS03515 at 659.366 kb on - strand, within MMP_RS03515 at 659.404 kb on - strand, within MMP_RS03515 at 659.405 kb on + strand, within MMP_RS03515 at 659.405 kb on + strand, within MMP_RS03515 at 659.433 kb on - strand, within MMP_RS03515 at 659.440 kb on - strand, within MMP_RS03515 at 659.443 kb on - strand, within MMP_RS03515 at 659.444 kb on + strand, within MMP_RS03515 at 659.447 kb on - strand, within MMP_RS03515 at 659.465 kb on - strand, within MMP_RS03515 at 659.466 kb on + strand, within MMP_RS03515 at 659.470 kb on - strand, within MMP_RS03515 at 659.495 kb on - strand, within MMP_RS03515 at 659.660 kb on - strand, within MMP_RS03515 at 659.660 kb on - strand, within MMP_RS03515 at 659.660 kb on - strand, within MMP_RS03515 at 659.660 kb on - strand, within MMP_RS03515 at 659.660 kb on - strand, within MMP_RS03515 at 659.661 kb on + strand, within MMP_RS03515 at 659.695 kb on - strand, within MMP_RS03515 at 659.743 kb on + strand, within MMP_RS03515 at 659.751 kb on - strand, within MMP_RS03515 at 659.751 kb on - strand, within MMP_RS03515 at 659.778 kb on - strand, within MMP_RS03515 at 659.781 kb on + strand, within MMP_RS03515 at 659.897 kb on + strand, within MMP_RS03515 at 659.956 kb on - strand, within MMP_RS03515 at 659.959 kb on + strand, within MMP_RS03515 at 659.959 kb on + strand, within MMP_RS03515 at 660.015 kb on - strand at 660.027 kb on + strand at 660.058 kb on - strand at 660.098 kb on + strand at 660.153 kb on + strand, within MMP_RS03520 at 660.159 kb on + strand, within MMP_RS03520 at 660.301 kb on - strand at 660.301 kb on - strand at 660.332 kb on + strand at 660.350 kb on - strand at 660.366 kb on - strand at 660.562 kb on - strand, within MMP_RS03525 at 660.562 kb on - strand, within MMP_RS03525 at 660.563 kb on + strand, within MMP_RS03525 at 660.564 kb on - strand, within MMP_RS03525 at 660.612 kb on - strand, within MMP_RS03525 at 660.616 kb on + strand, within MMP_RS03525 at 660.618 kb on + strand, within MMP_RS03525 at 660.735 kb on - strand, within MMP_RS03525 at 660.735 kb on - strand, within MMP_RS03525 at 660.762 kb on - strand, within MMP_RS03525 at 660.762 kb on - strand, within MMP_RS03525 at 660.797 kb on - strand, within MMP_RS03525 at 660.863 kb on - strand, within MMP_RS03525 at 660.875 kb on - strand, within MMP_RS03525 at 660.922 kb on + strand, within MMP_RS03525 at 660.952 kb on - strand, within MMP_RS03525 at 660.953 kb on + strand, within MMP_RS03525 at 660.966 kb on + strand, within MMP_RS03525 at 660.985 kb on + strand, within MMP_RS03525 at 661.042 kb on + strand, within MMP_RS03525 at 661.046 kb on - strand, within MMP_RS03525 at 661.049 kb on + strand, within MMP_RS03525 at 661.056 kb on + strand, within MMP_RS03525 at 661.089 kb on + strand, within MMP_RS03525
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_H2_complete Antimycin A 0.01 mM remove 659,033 - +2.7 659,093 + -0.8 659,277 + -0.4 659,301 - MMP_RS03515 0.10 +0.6 659,302 + MMP_RS03515 0.10 -0.6 659,366 - MMP_RS03515 0.18 -0.5 659,404 - MMP_RS03515 0.22 +0.8 659,405 + MMP_RS03515 0.22 -0.5 659,405 + MMP_RS03515 0.22 +0.7 659,433 - MMP_RS03515 0.25 +1.7 659,440 - MMP_RS03515 0.26 -6.1 659,443 - MMP_RS03515 0.26 +1.8 659,444 + MMP_RS03515 0.26 -1.6 659,447 - MMP_RS03515 0.27 +0.2 659,465 - MMP_RS03515 0.29 +1.2 659,466 + MMP_RS03515 0.29 +1.0 659,470 - MMP_RS03515 0.29 +0.9 659,495 - MMP_RS03515 0.32 -1.9 659,660 - MMP_RS03515 0.51 +1.0 659,660 - MMP_RS03515 0.51 -0.7 659,660 - MMP_RS03515 0.51 -0.6 659,660 - MMP_RS03515 0.51 +0.8 659,660 - MMP_RS03515 0.51 +2.4 659,661 + MMP_RS03515 0.51 +0.3 659,695 - MMP_RS03515 0.55 +0.9 659,743 + MMP_RS03515 0.60 +2.3 659,751 - MMP_RS03515 0.61 -1.4 659,751 - MMP_RS03515 0.61 -0.2 659,778 - MMP_RS03515 0.64 -2.3 659,781 + MMP_RS03515 0.64 -0.7 659,897 + MMP_RS03515 0.77 -0.7 659,956 - MMP_RS03515 0.84 -1.9 659,959 + MMP_RS03515 0.84 -0.6 659,959 + MMP_RS03515 0.84 +0.2 660,015 - -0.1 660,027 + +0.2 660,058 - +0.1 660,098 + -0.4 660,153 + MMP_RS03520 0.23 -0.2 660,159 + MMP_RS03520 0.26 +2.1 660,301 - +0.8 660,301 - -1.2 660,332 + +1.0 660,350 - -1.7 660,366 - -0.1 660,562 - MMP_RS03525 0.17 -0.8 660,562 - MMP_RS03525 0.17 +0.5 660,563 + MMP_RS03525 0.17 +1.3 660,564 - MMP_RS03525 0.17 -0.9 660,612 - MMP_RS03525 0.22 -1.4 660,616 + MMP_RS03525 0.23 +1.6 660,618 + MMP_RS03525 0.23 +0.4 660,735 - MMP_RS03525 0.36 -0.7 660,735 - MMP_RS03525 0.36 +2.0 660,762 - MMP_RS03525 0.39 -2.3 660,762 - MMP_RS03525 0.39 +0.3 660,797 - MMP_RS03525 0.42 +0.7 660,863 - MMP_RS03525 0.50 -1.5 660,875 - MMP_RS03525 0.51 +0.8 660,922 + MMP_RS03525 0.56 +1.2 660,952 - MMP_RS03525 0.59 +0.3 660,953 + MMP_RS03525 0.59 -0.7 660,966 + MMP_RS03525 0.61 +0.5 660,985 + MMP_RS03525 0.63 +0.1 661,042 + MMP_RS03525 0.69 +0.4 661,046 - MMP_RS03525 0.69 +1.1 661,049 + MMP_RS03525 0.70 +1.0 661,056 + MMP_RS03525 0.71 +1.0 661,089 + MMP_RS03525 0.74 -0.7
Or see this region's nucleotide sequence