Experiment: McCas_H2_complete Antimycin A 0.01 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS03275 and MMP_RS03280 are separated by 63 nucleotides MMP_RS03280 and MMP_RS03285 are separated by 117 nucleotides MMP_RS03285 and MMP_RS03290 are separated by 82 nucleotides MMP_RS03290 and MMP_RS03295 are separated by 9 nucleotides MMP_RS03295 and MMP_RS03300 are separated by 323 nucleotides MMP_RS03300 and MMP_RS03305 are separated by 168 nucleotides
MMP_RS03275: MMP_RS03275 - TIGR00266 family protein, at 617,665 to 618,333
_RS03275
MMP_RS03280: MMP_RS03280 - pyridoxamine 5'-phosphate oxidase family protein, at 618,397 to 618,798
_RS03280
MMP_RS03285: MMP_RS03285 - 50S ribosomal protein L14e, at 618,916 to 619,149
_RS03285
MMP_RS03290: MMP_RS03290 - AAA family ATPase, at 619,232 to 619,768
_RS03290
MMP_RS03295: MMP_RS03295 - 50S ribosomal protein L34e, at 619,778 to 620,047
_RS03295
MMP_RS03300: MMP_RS03300 - TOBE domain-containing protein, at 620,371 to 620,577
_RS03300
MMP_RS03305: MMP_RS03305 - winged helix-turn-helix domain-containing protein, at 620,746 to 621,144
_RS03305
Position (kb) 619
620 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 618.232 kb on - strand, within MMP_RS03275 at 618.233 kb on + strand, within MMP_RS03275 at 618.308 kb on + strand at 618.395 kb on + strand at 618.395 kb on + strand at 618.443 kb on - strand, within MMP_RS03280 at 618.482 kb on - strand, within MMP_RS03280 at 618.524 kb on - strand, within MMP_RS03280 at 618.579 kb on + strand, within MMP_RS03280 at 618.579 kb on + strand, within MMP_RS03280 at 618.658 kb on - strand, within MMP_RS03280 at 618.742 kb on + strand, within MMP_RS03280 at 618.742 kb on + strand, within MMP_RS03280 at 618.746 kb on + strand, within MMP_RS03280 at 618.753 kb on + strand, within MMP_RS03280 at 618.779 kb on - strand at 618.826 kb on - strand at 618.842 kb on - strand at 618.842 kb on - strand at 618.842 kb on - strand at 618.937 kb on - strand at 618.937 kb on - strand at 620.050 kb on - strand at 620.120 kb on - strand at 620.200 kb on - strand at 620.256 kb on - strand at 620.256 kb on - strand at 620.297 kb on - strand at 620.298 kb on + strand at 620.314 kb on - strand at 620.315 kb on + strand at 620.336 kb on - strand at 620.368 kb on - strand at 620.369 kb on + strand at 620.369 kb on + strand at 620.370 kb on - strand at 620.382 kb on - strand at 620.546 kb on - strand, within MMP_RS03300 at 620.642 kb on - strand at 620.643 kb on + strand at 620.645 kb on + strand at 620.662 kb on + strand at 620.664 kb on + strand at 620.679 kb on + strand at 620.682 kb on - strand at 620.682 kb on - strand at 620.683 kb on + strand at 620.685 kb on + strand at 620.685 kb on + strand at 620.686 kb on - strand at 620.692 kb on - strand at 620.716 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_H2_complete Antimycin A 0.01 mM remove 618,232 - MMP_RS03275 0.85 -0.7 618,233 + MMP_RS03275 0.85 +1.8 618,308 + -2.2 618,395 + -0.2 618,395 + +1.1 618,443 - MMP_RS03280 0.11 -0.5 618,482 - MMP_RS03280 0.21 -1.2 618,524 - MMP_RS03280 0.32 +0.7 618,579 + MMP_RS03280 0.45 +4.1 618,579 + MMP_RS03280 0.45 -0.4 618,658 - MMP_RS03280 0.65 +0.1 618,742 + MMP_RS03280 0.86 +1.0 618,742 + MMP_RS03280 0.86 +1.2 618,746 + MMP_RS03280 0.87 +1.1 618,753 + MMP_RS03280 0.89 +0.0 618,779 - +1.1 618,826 - +0.1 618,842 - -0.4 618,842 - -0.0 618,842 - +1.0 618,937 - -0.6 618,937 - -0.9 620,050 - -2.0 620,120 - -1.2 620,200 - -1.0 620,256 - -2.0 620,256 - -0.4 620,297 - +0.2 620,298 + +2.0 620,314 - -0.6 620,315 + -1.7 620,336 - +1.7 620,368 - +0.2 620,369 + -1.5 620,369 + +1.2 620,370 - +0.5 620,382 - -3.5 620,546 - MMP_RS03300 0.85 -4.5 620,642 - +1.0 620,643 + -0.4 620,645 + -0.4 620,662 + +0.3 620,664 + +1.0 620,679 + +2.1 620,682 - +2.9 620,682 - +1.3 620,683 + +1.1 620,685 + +2.4 620,685 + +0.9 620,686 - +3.0 620,692 - +3.6 620,716 + +2.4
Or see this region's nucleotide sequence