Experiment: McCas_H2_complete Antimycin A 0.01 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS03170 and MMP_RS03175 are separated by 144 nucleotides MMP_RS03175 and MMP_RS03180 are separated by 8 nucleotides MMP_RS03180 and MMP_RS03185 are separated by 80 nucleotides MMP_RS03185 and MMP_RS03190 are separated by 53 nucleotides
MMP_RS03170: MMP_RS03170 - orotidine-5'-phosphate decarboxylase, at 598,023 to 598,676
_RS03170
MMP_RS03175: MMP_RS03175 - translation initiation factor eIF-1A, at 598,821 to 599,135
_RS03175
MMP_RS03180: MMP_RS03180 - serine protein kinase RIO, at 599,144 to 599,965
_RS03180
MMP_RS03185: MMP_RS03185 - KH domain-containing protein, at 600,046 to 600,600
_RS03185
MMP_RS03190: MMP_RS03190 - RlmE family RNA methyltransferase, at 600,654 to 601,430
_RS03190
Position (kb) 599
600 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 598.411 kb on + strand at 598.533 kb on + strand at 598.677 kb on + strand at 598.689 kb on + strand at 598.863 kb on + strand at 599.116 kb on + strand at 599.499 kb on - strand at 599.527 kb on - strand at 599.701 kb on + strand at 599.777 kb on - strand at 600.004 kb on + strand at 600.066 kb on + strand at 600.417 kb on + strand at 600.632 kb on - strand at 600.744 kb on + strand at 600.781 kb on + strand at 600.841 kb on - strand at 600.842 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_H2_complete Antimycin A 0.01 mM remove 598,411 + +0.1 598,533 + -4.2 598,677 + -3.1 598,689 + +0.4 598,863 + -1.6 599,116 + -1.0 599,499 - -3.8 599,527 - -2.8 599,701 + +1.3 599,777 - -2.2 600,004 + -5.6 600,066 + -2.5 600,417 + -3.9 600,632 - +0.5 600,744 + -1.6 600,781 + -3.4 600,841 - -4.2 600,842 + -3.9
Or see this region's nucleotide sequence