Experiment: McCas_H2_complete Antimycin A 0.01 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS09045 and MMP_RS03170 are separated by 120 nucleotides MMP_RS03170 and MMP_RS03175 are separated by 144 nucleotides MMP_RS03175 and MMP_RS03180 are separated by 8 nucleotides
MMP_RS09045: MMP_RS09045 - class III signal peptide-containing protein, at 597,015 to 597,902
_RS09045
MMP_RS03170: MMP_RS03170 - orotidine-5'-phosphate decarboxylase, at 598,023 to 598,676
_RS03170
MMP_RS03175: MMP_RS03175 - translation initiation factor eIF-1A, at 598,821 to 599,135
_RS03175
MMP_RS03180: MMP_RS03180 - serine protein kinase RIO, at 599,144 to 599,965
_RS03180
Position (kb) 598
599 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 597.038 kb on - strand at 597.042 kb on + strand at 597.043 kb on - strand at 597.043 kb on - strand at 597.080 kb on - strand at 597.080 kb on - strand at 597.108 kb on - strand, within MMP_RS09045 at 597.115 kb on - strand, within MMP_RS09045 at 597.147 kb on + strand, within MMP_RS09045 at 597.197 kb on + strand, within MMP_RS09045 at 597.197 kb on + strand, within MMP_RS09045 at 597.209 kb on + strand, within MMP_RS09045 at 597.209 kb on + strand, within MMP_RS09045 at 597.227 kb on - strand, within MMP_RS09045 at 597.227 kb on - strand, within MMP_RS09045 at 597.228 kb on + strand, within MMP_RS09045 at 597.250 kb on - strand, within MMP_RS09045 at 597.266 kb on - strand, within MMP_RS09045 at 597.328 kb on - strand, within MMP_RS09045 at 597.344 kb on - strand, within MMP_RS09045 at 597.345 kb on + strand, within MMP_RS09045 at 597.505 kb on + strand, within MMP_RS09045 at 597.514 kb on + strand, within MMP_RS09045 at 597.569 kb on - strand, within MMP_RS09045 at 597.593 kb on - strand, within MMP_RS09045 at 597.593 kb on - strand, within MMP_RS09045 at 597.593 kb on - strand, within MMP_RS09045 at 597.593 kb on - strand, within MMP_RS09045 at 597.609 kb on + strand, within MMP_RS09045 at 597.611 kb on - strand, within MMP_RS09045 at 597.612 kb on + strand, within MMP_RS09045 at 597.612 kb on + strand, within MMP_RS09045 at 597.626 kb on - strand, within MMP_RS09045 at 597.626 kb on - strand, within MMP_RS09045 at 597.627 kb on + strand, within MMP_RS09045 at 597.629 kb on - strand, within MMP_RS09045 at 597.629 kb on - strand, within MMP_RS09045 at 597.644 kb on - strand, within MMP_RS09045 at 597.645 kb on + strand, within MMP_RS09045 at 597.662 kb on - strand, within MMP_RS09045 at 597.666 kb on + strand, within MMP_RS09045 at 597.680 kb on - strand, within MMP_RS09045 at 597.681 kb on + strand, within MMP_RS09045 at 597.797 kb on - strand, within MMP_RS09045 at 597.840 kb on - strand at 597.855 kb on - strand at 597.855 kb on - strand at 597.902 kb on - strand at 597.902 kb on - strand at 597.903 kb on + strand at 597.903 kb on + strand at 597.906 kb on - strand at 597.920 kb on + strand at 597.958 kb on - strand at 597.965 kb on + strand at 597.965 kb on + strand at 597.965 kb on + strand at 597.965 kb on + strand at 597.966 kb on - strand at 597.966 kb on - strand at 597.967 kb on + strand at 597.969 kb on + strand at 597.982 kb on + strand at 598.013 kb on - strand at 598.014 kb on + strand at 598.024 kb on - strand at 598.025 kb on + strand at 598.411 kb on + strand at 598.533 kb on + strand at 598.677 kb on + strand at 598.689 kb on + strand at 598.863 kb on + strand at 599.116 kb on + strand at 599.499 kb on - strand at 599.527 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_H2_complete Antimycin A 0.01 mM remove 597,038 - -0.2 597,042 + -2.4 597,043 - +1.3 597,043 - -0.1 597,080 - -2.8 597,080 - -3.0 597,108 - MMP_RS09045 0.10 -0.4 597,115 - MMP_RS09045 0.11 -0.9 597,147 + MMP_RS09045 0.15 -1.7 597,197 + MMP_RS09045 0.20 -0.6 597,197 + MMP_RS09045 0.20 -1.4 597,209 + MMP_RS09045 0.22 -2.5 597,209 + MMP_RS09045 0.22 -1.3 597,227 - MMP_RS09045 0.24 -2.6 597,227 - MMP_RS09045 0.24 -0.4 597,228 + MMP_RS09045 0.24 -1.3 597,250 - MMP_RS09045 0.26 -2.8 597,266 - MMP_RS09045 0.28 -1.8 597,328 - MMP_RS09045 0.35 -1.3 597,344 - MMP_RS09045 0.37 -2.2 597,345 + MMP_RS09045 0.37 -1.2 597,505 + MMP_RS09045 0.55 -1.4 597,514 + MMP_RS09045 0.56 -3.3 597,569 - MMP_RS09045 0.62 -0.7 597,593 - MMP_RS09045 0.65 -1.7 597,593 - MMP_RS09045 0.65 -2.4 597,593 - MMP_RS09045 0.65 -1.1 597,593 - MMP_RS09045 0.65 -1.4 597,609 + MMP_RS09045 0.67 -2.2 597,611 - MMP_RS09045 0.67 -1.1 597,612 + MMP_RS09045 0.67 -2.5 597,612 + MMP_RS09045 0.67 -1.7 597,626 - MMP_RS09045 0.69 -1.2 597,626 - MMP_RS09045 0.69 -2.1 597,627 + MMP_RS09045 0.69 -1.6 597,629 - MMP_RS09045 0.69 -1.7 597,629 - MMP_RS09045 0.69 -2.9 597,644 - MMP_RS09045 0.71 -1.0 597,645 + MMP_RS09045 0.71 -1.7 597,662 - MMP_RS09045 0.73 -2.6 597,666 + MMP_RS09045 0.73 -1.5 597,680 - MMP_RS09045 0.75 -0.5 597,681 + MMP_RS09045 0.75 -3.3 597,797 - MMP_RS09045 0.88 -2.7 597,840 - -3.0 597,855 - -2.4 597,855 - -1.7 597,902 - -1.6 597,902 - -1.5 597,903 + -0.5 597,903 + -2.5 597,906 - -1.0 597,920 + -0.6 597,958 - -2.2 597,965 + -1.1 597,965 + -2.2 597,965 + -1.3 597,965 + -1.1 597,966 - -2.9 597,966 - -1.5 597,967 + -5.4 597,969 + -1.7 597,982 + -1.0 598,013 - -0.7 598,014 + -1.7 598,024 - -1.2 598,025 + -1.0 598,411 + +0.1 598,533 + -4.2 598,677 + -3.1 598,689 + +0.4 598,863 + -1.6 599,116 + -1.0 599,499 - -3.8 599,527 - -2.8
Or see this region's nucleotide sequence