Experiment: McCas_H2_complete Antimycin A 0.01 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS03150 and MMP_RS03155 are separated by 4 nucleotides MMP_RS03155 and MMP_RS03160 are separated by 34 nucleotides MMP_RS03160 and MMP_RS09045 are separated by 94 nucleotides
MMP_RS03150: MMP_RS03150 - phosphoglycerate mutase, at 594,165 to 595,451
_RS03150
MMP_RS03155: MMP_RS03155 - precorrin-6A reductase, at 595,456 to 596,202
_RS03155
MMP_RS03160: MMP_RS03160 - class III signal peptide-containing protein, at 596,237 to 596,920
_RS03160
MMP_RS09045: MMP_RS09045 - class III signal peptide-containing protein, at 597,015 to 597,902
_RS09045
Position (kb) 596
597 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1
2
3 at 595.243 kb on - strand, within MMP_RS03150 at 595.277 kb on - strand, within MMP_RS03150 at 595.308 kb on + strand, within MMP_RS03150 at 595.324 kb on - strand at 595.325 kb on + strand at 595.340 kb on + strand at 595.375 kb on - strand at 595.378 kb on - strand at 595.379 kb on + strand at 595.381 kb on + strand at 595.435 kb on - strand at 595.435 kb on - strand at 595.435 kb on - strand at 595.436 kb on + strand at 595.444 kb on - strand at 595.445 kb on + strand at 595.517 kb on + strand at 595.533 kb on - strand, within MMP_RS03155 at 595.612 kb on + strand, within MMP_RS03155 at 595.618 kb on - strand, within MMP_RS03155 at 595.619 kb on + strand, within MMP_RS03155 at 595.642 kb on - strand, within MMP_RS03155 at 595.643 kb on + strand, within MMP_RS03155 at 595.643 kb on + strand, within MMP_RS03155 at 595.807 kb on + strand, within MMP_RS03155 at 595.808 kb on - strand, within MMP_RS03155 at 595.808 kb on - strand, within MMP_RS03155 at 595.809 kb on + strand, within MMP_RS03155 at 595.814 kb on + strand, within MMP_RS03155 at 595.840 kb on - strand, within MMP_RS03155 at 595.916 kb on - strand, within MMP_RS03155 at 596.146 kb on + strand at 596.161 kb on + strand at 596.226 kb on + strand at 596.229 kb on - strand at 596.230 kb on + strand at 596.271 kb on + strand at 596.271 kb on + strand at 596.273 kb on + strand at 596.334 kb on + strand, within MMP_RS03160 at 596.360 kb on - strand, within MMP_RS03160 at 596.528 kb on + strand, within MMP_RS03160 at 596.579 kb on + strand, within MMP_RS03160 at 596.614 kb on - strand, within MMP_RS03160 at 596.614 kb on - strand, within MMP_RS03160 at 596.635 kb on + strand, within MMP_RS03160 at 596.635 kb on + strand, within MMP_RS03160 at 596.639 kb on - strand, within MMP_RS03160 at 596.643 kb on - strand, within MMP_RS03160 at 596.643 kb on - strand, within MMP_RS03160 at 596.643 kb on - strand, within MMP_RS03160 at 596.643 kb on - strand, within MMP_RS03160 at 596.643 kb on - strand, within MMP_RS03160 at 596.643 kb on - strand, within MMP_RS03160 at 596.643 kb on - strand, within MMP_RS03160 at 596.644 kb on + strand, within MMP_RS03160 at 596.644 kb on + strand, within MMP_RS03160 at 596.644 kb on + strand, within MMP_RS03160 at 596.644 kb on + strand, within MMP_RS03160 at 596.644 kb on + strand, within MMP_RS03160 at 596.648 kb on + strand, within MMP_RS03160 at 596.666 kb on - strand, within MMP_RS03160 at 596.667 kb on + strand, within MMP_RS03160 at 596.667 kb on + strand, within MMP_RS03160 at 596.686 kb on + strand, within MMP_RS03160 at 596.741 kb on - strand, within MMP_RS03160 at 596.742 kb on + strand, within MMP_RS03160 at 596.801 kb on - strand, within MMP_RS03160 at 596.801 kb on - strand, within MMP_RS03160 at 596.802 kb on + strand, within MMP_RS03160 at 596.861 kb on - strand at 596.861 kb on - strand at 596.882 kb on - strand at 596.882 kb on - strand at 596.920 kb on - strand at 596.920 kb on - strand at 596.920 kb on - strand at 596.922 kb on - strand at 596.923 kb on + strand at 596.923 kb on + strand at 596.923 kb on + strand at 596.924 kb on - strand at 596.924 kb on - strand at 596.924 kb on - strand at 596.925 kb on + strand at 596.952 kb on + strand at 596.952 kb on + strand at 596.956 kb on - strand at 596.956 kb on - strand at 596.956 kb on - strand at 596.956 kb on - strand at 596.956 kb on - strand at 596.957 kb on + strand at 596.957 kb on + strand at 596.959 kb on + strand at 596.961 kb on + strand at 596.989 kb on - strand at 596.990 kb on + strand at 597.038 kb on - strand at 597.042 kb on + strand at 597.043 kb on - strand at 597.043 kb on - strand at 597.080 kb on - strand at 597.080 kb on - strand at 597.108 kb on - strand, within MMP_RS09045 at 597.115 kb on - strand, within MMP_RS09045 at 597.147 kb on + strand, within MMP_RS09045 at 597.197 kb on + strand, within MMP_RS09045 at 597.197 kb on + strand, within MMP_RS09045 at 597.209 kb on + strand, within MMP_RS09045 at 597.209 kb on + strand, within MMP_RS09045 at 597.227 kb on - strand, within MMP_RS09045 at 597.227 kb on - strand, within MMP_RS09045 at 597.228 kb on + strand, within MMP_RS09045 at 597.250 kb on - strand, within MMP_RS09045 at 597.266 kb on - strand, within MMP_RS09045 at 597.328 kb on - strand, within MMP_RS09045 at 597.344 kb on - strand, within MMP_RS09045 at 597.345 kb on + strand, within MMP_RS09045 at 597.505 kb on + strand, within MMP_RS09045 at 597.514 kb on + strand, within MMP_RS09045 at 597.569 kb on - strand, within MMP_RS09045 at 597.593 kb on - strand, within MMP_RS09045 at 597.593 kb on - strand, within MMP_RS09045 at 597.593 kb on - strand, within MMP_RS09045 at 597.593 kb on - strand, within MMP_RS09045 at 597.609 kb on + strand, within MMP_RS09045 at 597.611 kb on - strand, within MMP_RS09045 at 597.612 kb on + strand, within MMP_RS09045 at 597.612 kb on + strand, within MMP_RS09045 at 597.626 kb on - strand, within MMP_RS09045 at 597.626 kb on - strand, within MMP_RS09045 at 597.627 kb on + strand, within MMP_RS09045 at 597.629 kb on - strand, within MMP_RS09045 at 597.629 kb on - strand, within MMP_RS09045 at 597.644 kb on - strand, within MMP_RS09045 at 597.645 kb on + strand, within MMP_RS09045 at 597.662 kb on - strand, within MMP_RS09045 at 597.666 kb on + strand, within MMP_RS09045 at 597.680 kb on - strand, within MMP_RS09045 at 597.681 kb on + strand, within MMP_RS09045 at 597.797 kb on - strand, within MMP_RS09045 at 597.840 kb on - strand at 597.855 kb on - strand at 597.855 kb on - strand at 597.902 kb on - strand at 597.902 kb on - strand at 597.903 kb on + strand at 597.903 kb on + strand at 597.906 kb on - strand at 597.920 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_H2_complete Antimycin A 0.01 mM remove 595,243 - MMP_RS03150 0.84 +1.4 595,277 - MMP_RS03150 0.86 +1.4 595,308 + MMP_RS03150 0.89 +2.0 595,324 - -0.6 595,325 + +0.1 595,340 + +1.7 595,375 - +2.4 595,378 - +0.1 595,379 + +0.7 595,381 + -0.4 595,435 - +1.2 595,435 - +1.3 595,435 - -0.3 595,436 + +0.5 595,444 - -0.4 595,445 + -0.5 595,517 + +0.1 595,533 - MMP_RS03155 0.10 -5.8 595,612 + MMP_RS03155 0.21 +0.0 595,618 - MMP_RS03155 0.22 -4.9 595,619 + MMP_RS03155 0.22 -1.7 595,642 - MMP_RS03155 0.25 -0.9 595,643 + MMP_RS03155 0.25 -0.4 595,643 + MMP_RS03155 0.25 -1.3 595,807 + MMP_RS03155 0.47 -1.3 595,808 - MMP_RS03155 0.47 -0.8 595,808 - MMP_RS03155 0.47 +0.5 595,809 + MMP_RS03155 0.47 -0.9 595,814 + MMP_RS03155 0.48 -0.9 595,840 - MMP_RS03155 0.51 -0.6 595,916 - MMP_RS03155 0.62 -0.2 596,146 + -0.1 596,161 + -0.1 596,226 + -0.5 596,229 - +0.3 596,230 + +0.1 596,271 + +0.7 596,271 + +0.4 596,273 + -3.6 596,334 + MMP_RS03160 0.14 -1.0 596,360 - MMP_RS03160 0.18 +0.1 596,528 + MMP_RS03160 0.43 +0.7 596,579 + MMP_RS03160 0.50 -1.5 596,614 - MMP_RS03160 0.55 +0.6 596,614 - MMP_RS03160 0.55 +0.6 596,635 + MMP_RS03160 0.58 +1.2 596,635 + MMP_RS03160 0.58 +2.0 596,639 - MMP_RS03160 0.59 -0.1 596,643 - MMP_RS03160 0.59 +1.0 596,643 - MMP_RS03160 0.59 +2.0 596,643 - MMP_RS03160 0.59 +0.6 596,643 - MMP_RS03160 0.59 +1.8 596,643 - MMP_RS03160 0.59 +0.5 596,643 - MMP_RS03160 0.59 +2.0 596,643 - MMP_RS03160 0.59 +0.9 596,644 + MMP_RS03160 0.60 -0.5 596,644 + MMP_RS03160 0.60 -0.2 596,644 + MMP_RS03160 0.60 -1.0 596,644 + MMP_RS03160 0.60 +0.3 596,644 + MMP_RS03160 0.60 +0.1 596,648 + MMP_RS03160 0.60 +1.3 596,666 - MMP_RS03160 0.63 +0.7 596,667 + MMP_RS03160 0.63 +0.9 596,667 + MMP_RS03160 0.63 -0.1 596,686 + MMP_RS03160 0.66 -0.5 596,741 - MMP_RS03160 0.74 +0.7 596,742 + MMP_RS03160 0.74 +0.8 596,801 - MMP_RS03160 0.82 +2.5 596,801 - MMP_RS03160 0.82 -1.1 596,802 + MMP_RS03160 0.83 +1.3 596,861 - +0.1 596,861 - -1.3 596,882 - +1.5 596,882 - -2.3 596,920 - -0.4 596,920 - +3.3 596,920 - +0.5 596,922 - +2.0 596,923 + +0.0 596,923 + +0.7 596,923 + +2.7 596,924 - +1.3 596,924 - +2.0 596,924 - -0.7 596,925 + +0.1 596,952 + +0.6 596,952 + -1.7 596,956 - -0.6 596,956 - +0.3 596,956 - +0.0 596,956 - +0.0 596,956 - -2.5 596,957 + +1.0 596,957 + +1.3 596,959 + +0.1 596,961 + +0.9 596,989 - -0.6 596,990 + -0.1 597,038 - -0.2 597,042 + -2.4 597,043 - +1.3 597,043 - -0.1 597,080 - -2.8 597,080 - -3.0 597,108 - MMP_RS09045 0.10 -0.4 597,115 - MMP_RS09045 0.11 -0.9 597,147 + MMP_RS09045 0.15 -1.7 597,197 + MMP_RS09045 0.20 -0.6 597,197 + MMP_RS09045 0.20 -1.4 597,209 + MMP_RS09045 0.22 -2.5 597,209 + MMP_RS09045 0.22 -1.3 597,227 - MMP_RS09045 0.24 -2.6 597,227 - MMP_RS09045 0.24 -0.4 597,228 + MMP_RS09045 0.24 -1.3 597,250 - MMP_RS09045 0.26 -2.8 597,266 - MMP_RS09045 0.28 -1.8 597,328 - MMP_RS09045 0.35 -1.3 597,344 - MMP_RS09045 0.37 -2.2 597,345 + MMP_RS09045 0.37 -1.2 597,505 + MMP_RS09045 0.55 -1.4 597,514 + MMP_RS09045 0.56 -3.3 597,569 - MMP_RS09045 0.62 -0.7 597,593 - MMP_RS09045 0.65 -1.7 597,593 - MMP_RS09045 0.65 -2.4 597,593 - MMP_RS09045 0.65 -1.1 597,593 - MMP_RS09045 0.65 -1.4 597,609 + MMP_RS09045 0.67 -2.2 597,611 - MMP_RS09045 0.67 -1.1 597,612 + MMP_RS09045 0.67 -2.5 597,612 + MMP_RS09045 0.67 -1.7 597,626 - MMP_RS09045 0.69 -1.2 597,626 - MMP_RS09045 0.69 -2.1 597,627 + MMP_RS09045 0.69 -1.6 597,629 - MMP_RS09045 0.69 -1.7 597,629 - MMP_RS09045 0.69 -2.9 597,644 - MMP_RS09045 0.71 -1.0 597,645 + MMP_RS09045 0.71 -1.7 597,662 - MMP_RS09045 0.73 -2.6 597,666 + MMP_RS09045 0.73 -1.5 597,680 - MMP_RS09045 0.75 -0.5 597,681 + MMP_RS09045 0.75 -3.3 597,797 - MMP_RS09045 0.88 -2.7 597,840 - -3.0 597,855 - -2.4 597,855 - -1.7 597,902 - -1.6 597,902 - -1.5 597,903 + -0.5 597,903 + -2.5 597,906 - -1.0 597,920 + -0.6
Or see this region's nucleotide sequence