Experiment: McCas_H2_complete Antimycin A 0.01 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS03065 and MMP_RS03070 overlap by 8 nucleotides MMP_RS03070 and MMP_RS03075 are separated by 52 nucleotides MMP_RS03075 and MMP_RS03080 are separated by 422 nucleotides MMP_RS03080 and MMP_RS03085 are separated by 4 nucleotides
MMP_RS03065: MMP_RS03065 - AzlC family ABC transporter permease, at 577,959 to 578,675
_RS03065
MMP_RS03070: MMP_RS03070 - AzlD domain-containing protein, at 578,668 to 578,976
_RS03070
MMP_RS03075: MMP_RS03075 - valine--tRNA ligase, at 579,029 to 581,689
_RS03075
MMP_RS03080: MMP_RS03080 - universal stress protein, at 582,112 to 582,549
_RS03080
MMP_RS03085: MMP_RS03085 - endonuclease III, at 582,554 to 583,252
_RS03085
Position (kb) 579
580
581
582 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5 at 578.099 kb on + strand, within MMP_RS03065 at 578.179 kb on - strand, within MMP_RS03065 at 578.621 kb on - strand at 578.621 kb on - strand at 578.622 kb on + strand at 578.653 kb on - strand at 578.690 kb on - strand at 578.691 kb on + strand at 578.691 kb on + strand at 578.719 kb on - strand, within MMP_RS03070 at 578.719 kb on - strand, within MMP_RS03070 at 578.720 kb on + strand, within MMP_RS03070 at 578.720 kb on + strand, within MMP_RS03070 at 578.720 kb on + strand, within MMP_RS03070 at 578.861 kb on + strand, within MMP_RS03070 at 578.903 kb on + strand, within MMP_RS03070 at 578.907 kb on - strand, within MMP_RS03070 at 578.953 kb on - strand at 578.953 kb on - strand at 578.954 kb on + strand at 578.954 kb on + strand at 578.955 kb on - strand at 578.956 kb on + strand at 579.273 kb on + strand at 579.320 kb on - strand at 580.676 kb on - strand at 581.269 kb on - strand at 581.272 kb on - strand at 581.274 kb on - strand at 581.786 kb on - strand at 581.786 kb on - strand at 581.786 kb on - strand at 581.795 kb on - strand at 581.871 kb on + strand at 581.923 kb on + strand at 581.938 kb on - strand at 581.959 kb on + strand at 581.963 kb on + strand at 581.963 kb on + strand at 581.975 kb on - strand at 582.008 kb on - strand at 582.059 kb on + strand at 582.059 kb on + strand at 582.064 kb on - strand at 582.064 kb on - strand at 582.066 kb on - strand at 582.066 kb on - strand at 582.067 kb on + strand at 582.068 kb on - strand at 582.069 kb on + strand at 582.080 kb on - strand at 582.359 kb on - strand, within MMP_RS03080 at 582.360 kb on + strand, within MMP_RS03080 at 582.476 kb on - strand, within MMP_RS03080 at 582.477 kb on + strand, within MMP_RS03080 at 582.555 kb on - strand at 582.556 kb on + strand at 582.584 kb on - strand at 582.585 kb on + strand at 582.589 kb on + strand at 582.654 kb on + strand, within MMP_RS03085
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_H2_complete Antimycin A 0.01 mM remove 578,099 + MMP_RS03065 0.20 +0.8 578,179 - MMP_RS03065 0.31 +1.2 578,621 - +0.3 578,621 - -0.4 578,622 + -0.6 578,653 - +0.2 578,690 - +1.3 578,691 + +1.0 578,691 + +5.0 578,719 - MMP_RS03070 0.17 +0.0 578,719 - MMP_RS03070 0.17 -2.6 578,720 + MMP_RS03070 0.17 +0.4 578,720 + MMP_RS03070 0.17 -2.4 578,720 + MMP_RS03070 0.17 +1.4 578,861 + MMP_RS03070 0.62 -1.8 578,903 + MMP_RS03070 0.76 +0.3 578,907 - MMP_RS03070 0.77 -0.2 578,953 - +0.1 578,953 - -1.2 578,954 + +1.4 578,954 + +1.1 578,955 - +0.1 578,956 + +0.9 579,273 + -2.6 579,320 - +1.6 580,676 - -3.1 581,269 - -3.7 581,272 - -3.7 581,274 - -2.2 581,786 - -0.3 581,786 - -0.8 581,786 - -1.4 581,795 - -1.1 581,871 + +0.6 581,923 + +1.1 581,938 - +0.6 581,959 + -0.1 581,963 + +2.4 581,963 + -1.1 581,975 - +0.5 582,008 - -1.0 582,059 + -0.3 582,059 + -2.0 582,064 - +0.7 582,064 - +2.1 582,066 - +0.4 582,066 - -0.6 582,067 + +0.2 582,068 - -0.1 582,069 + -0.6 582,080 - -1.5 582,359 - MMP_RS03080 0.56 -1.7 582,360 + MMP_RS03080 0.57 -3.9 582,476 - MMP_RS03080 0.83 -0.4 582,477 + MMP_RS03080 0.83 -2.5 582,555 - -1.0 582,556 + -0.1 582,584 - -2.0 582,585 + -0.4 582,589 + +0.6 582,654 + MMP_RS03085 0.14 +0.6
Or see this region's nucleotide sequence