Experiment: McCas_H2_complete Antimycin A 0.01 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS03035 and MMP_RS03040 are separated by 9 nucleotides MMP_RS03040 and MMP_RS03045 are separated by 79 nucleotides MMP_RS03045 and MMP_RS03050 are separated by 99 nucleotides MMP_RS03050 and MMP_RS03055 are separated by 9 nucleotides
MMP_RS03035: MMP_RS03035 - 4-hydroxy-tetrahydrodipicolinate synthase, at 573,961 to 574,830
_RS03035
MMP_RS03040: MMP_RS03040 - 30S ribosomal protein S17e, at 574,840 to 575,031
_RS03040
MMP_RS03045: MMP_RS03045 - chorismate mutase, at 575,111 to 575,401
_RS03045
MMP_RS03050: MMP_RS03050 - DUF115 domain-containing protein, at 575,501 to 576,217
_RS03050
MMP_RS03055: MMP_RS03055 - anaerobic ribonucleoside-triphosphate reductase activating protein, at 576,227 to 576,937
_RS03055
Position (kb) 575
576 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 574.291 kb on - strand, within MMP_RS03035 at 574.365 kb on - strand, within MMP_RS03035 at 574.440 kb on + strand, within MMP_RS03035 at 574.441 kb on - strand, within MMP_RS03035 at 574.447 kb on - strand, within MMP_RS03035 at 574.447 kb on - strand, within MMP_RS03035 at 574.518 kb on + strand, within MMP_RS03035 at 575.050 kb on - strand at 575.094 kb on - strand at 575.096 kb on - strand at 575.192 kb on - strand at 575.333 kb on - strand at 575.402 kb on + strand at 575.402 kb on + strand at 575.451 kb on - strand at 575.490 kb on + strand at 575.644 kb on + strand at 575.737 kb on + strand at 576.093 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_H2_complete Antimycin A 0.01 mM remove 574,291 - MMP_RS03035 0.38 -4.1 574,365 - MMP_RS03035 0.46 -4.8 574,440 + MMP_RS03035 0.55 -0.7 574,441 - MMP_RS03035 0.55 -4.5 574,447 - MMP_RS03035 0.56 -3.0 574,447 - MMP_RS03035 0.56 -0.9 574,518 + MMP_RS03035 0.64 -1.8 575,050 - -3.6 575,094 - -1.5 575,096 - -1.7 575,192 - -2.5 575,333 - -4.4 575,402 + -2.9 575,402 + -4.2 575,451 - -2.6 575,490 + -2.0 575,644 + -2.1 575,737 + -4.8 576,093 + -0.4
Or see this region's nucleotide sequence