Experiment: McCas_H2_complete Antimycin A 0.01 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS02955 and MMP_RS02960 are separated by 61 nucleotides MMP_RS02960 and MMP_RS02965 are separated by 13 nucleotides MMP_RS02965 and MMP_RS02970 are separated by 334 nucleotides MMP_RS02970 and MMP_RS02975 are separated by 150 nucleotides
MMP_RS02955: MMP_RS02955 - DJ-1/PfpI family protein, at 560,696 to 561,211
_RS02955
MMP_RS02960: MMP_RS02960 - class I SAM-dependent methyltransferase family protein, at 561,273 to 562,034
_RS02960
MMP_RS02965: MMP_RS02965 - carboxymuconolactone decarboxylase family protein, at 562,048 to 562,482
_RS02965
MMP_RS02970: MMP_RS02970 - hypothetical protein, at 562,817 to 563,107
_RS02970
MMP_RS02975: MMP_RS02975 - DUF2124 domain-containing protein, at 563,258 to 563,740
_RS02975
Position (kb) 562
563 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 561.250 kb on - strand at 561.251 kb on + strand at 561.251 kb on + strand at 561.323 kb on - strand at 561.334 kb on - strand at 561.355 kb on + strand, within MMP_RS02960 at 561.366 kb on + strand, within MMP_RS02960 at 561.398 kb on - strand, within MMP_RS02960 at 561.398 kb on - strand, within MMP_RS02960 at 561.399 kb on + strand, within MMP_RS02960 at 561.399 kb on + strand, within MMP_RS02960 at 561.399 kb on + strand, within MMP_RS02960 at 561.402 kb on - strand, within MMP_RS02960 at 561.402 kb on - strand, within MMP_RS02960 at 561.402 kb on - strand, within MMP_RS02960 at 561.651 kb on - strand, within MMP_RS02960 at 561.835 kb on - strand, within MMP_RS02960 at 561.888 kb on + strand, within MMP_RS02960 at 561.968 kb on - strand at 561.982 kb on + strand at 562.111 kb on + strand, within MMP_RS02965 at 562.111 kb on + strand, within MMP_RS02965 at 562.114 kb on + strand, within MMP_RS02965 at 562.210 kb on - strand, within MMP_RS02965 at 562.483 kb on + strand at 562.509 kb on - strand at 562.515 kb on + strand at 562.559 kb on - strand at 562.567 kb on + strand at 562.568 kb on - strand at 562.568 kb on - strand at 562.568 kb on - strand at 562.576 kb on - strand at 562.577 kb on + strand at 562.584 kb on + strand at 562.622 kb on + strand at 562.634 kb on + strand at 562.683 kb on - strand at 562.860 kb on - strand, within MMP_RS02970 at 562.860 kb on - strand, within MMP_RS02970 at 562.918 kb on + strand, within MMP_RS02970 at 562.918 kb on + strand, within MMP_RS02970 at 562.921 kb on + strand, within MMP_RS02970 at 563.057 kb on - strand, within MMP_RS02970 at 563.057 kb on - strand, within MMP_RS02970 at 563.057 kb on - strand, within MMP_RS02970 at 563.058 kb on + strand, within MMP_RS02970 at 563.060 kb on + strand, within MMP_RS02970 at 563.060 kb on + strand, within MMP_RS02970 at 563.060 kb on + strand, within MMP_RS02970 at 563.064 kb on - strand, within MMP_RS02970 at 563.064 kb on - strand, within MMP_RS02970 at 563.065 kb on + strand, within MMP_RS02970 at 563.139 kb on - strand at 563.139 kb on - strand at 563.166 kb on + strand at 563.166 kb on + strand at 563.169 kb on - strand at 563.305 kb on - strand at 563.305 kb on - strand at 563.305 kb on - strand at 563.338 kb on - strand, within MMP_RS02975 at 563.367 kb on + strand, within MMP_RS02975 at 563.368 kb on - strand, within MMP_RS02975
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_H2_complete Antimycin A 0.01 mM remove 561,250 - -1.1 561,251 + -4.0 561,251 + -0.9 561,323 - +0.5 561,334 - +0.9 561,355 + MMP_RS02960 0.11 +0.8 561,366 + MMP_RS02960 0.12 -1.9 561,398 - MMP_RS02960 0.16 -0.5 561,398 - MMP_RS02960 0.16 +0.0 561,399 + MMP_RS02960 0.17 -3.3 561,399 + MMP_RS02960 0.17 +2.6 561,399 + MMP_RS02960 0.17 +0.2 561,402 - MMP_RS02960 0.17 -0.1 561,402 - MMP_RS02960 0.17 +1.1 561,402 - MMP_RS02960 0.17 -0.2 561,651 - MMP_RS02960 0.50 +0.9 561,835 - MMP_RS02960 0.74 +1.1 561,888 + MMP_RS02960 0.81 -1.1 561,968 - +0.6 561,982 + -0.6 562,111 + MMP_RS02965 0.14 +0.6 562,111 + MMP_RS02965 0.14 +0.1 562,114 + MMP_RS02965 0.15 +2.8 562,210 - MMP_RS02965 0.37 +1.2 562,483 + +2.1 562,509 - +0.4 562,515 + -0.3 562,559 - -0.6 562,567 + -0.3 562,568 - +1.0 562,568 - +0.8 562,568 - +2.2 562,576 - -0.8 562,577 + -1.1 562,584 + +0.4 562,622 + -0.1 562,634 + -1.2 562,683 - +0.4 562,860 - MMP_RS02970 0.15 +0.6 562,860 - MMP_RS02970 0.15 +2.2 562,918 + MMP_RS02970 0.35 +0.7 562,918 + MMP_RS02970 0.35 +0.2 562,921 + MMP_RS02970 0.36 +1.0 563,057 - MMP_RS02970 0.82 -0.6 563,057 - MMP_RS02970 0.82 +0.7 563,057 - MMP_RS02970 0.82 +0.5 563,058 + MMP_RS02970 0.83 +0.8 563,060 + MMP_RS02970 0.84 +0.1 563,060 + MMP_RS02970 0.84 -1.3 563,060 + MMP_RS02970 0.84 +0.6 563,064 - MMP_RS02970 0.85 +0.6 563,064 - MMP_RS02970 0.85 +2.5 563,065 + MMP_RS02970 0.85 +0.1 563,139 - -2.0 563,139 - -3.4 563,166 + +0.3 563,166 + -0.2 563,169 - +0.3 563,305 - -0.3 563,305 - -1.2 563,305 - +0.3 563,338 - MMP_RS02975 0.17 -1.6 563,367 + MMP_RS02975 0.23 +1.1 563,368 - MMP_RS02975 0.23 -1.3
Or see this region's nucleotide sequence