Experiment: McCas_H2_complete Antimycin A 0.01 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS02750 and MMP_RS02755 are separated by 101 nucleotides MMP_RS02755 and MMP_RS02760 are separated by 12 nucleotides
MMP_RS02750: MMP_RS02750 - HAD-IC family P-type ATPase, at 523,959 to 526,463
_RS02750
MMP_RS02755: MMP_RS02755 - ABC transporter permease, at 526,565 to 527,812
_RS02755
MMP_RS02760: MMP_RS02760 - COG1361 S-layer family protein, at 527,825 to 529,141
_RS02760
Position (kb) 526
527
528 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 525.764 kb on + strand, within MMP_RS02750 at 526.322 kb on - strand at 526.433 kb on + strand at 526.452 kb on + strand at 526.493 kb on + strand at 526.497 kb on - strand at 526.518 kb on - strand at 526.519 kb on + strand at 526.519 kb on + strand at 526.519 kb on + strand at 526.520 kb on - strand at 526.521 kb on + strand at 526.522 kb on - strand at 526.522 kb on - strand at 526.522 kb on - strand at 526.522 kb on - strand at 526.522 kb on - strand at 526.522 kb on - strand at 526.522 kb on - strand at 526.667 kb on - strand at 526.736 kb on - strand, within MMP_RS02755 at 526.750 kb on - strand, within MMP_RS02755 at 526.751 kb on + strand, within MMP_RS02755 at 526.857 kb on + strand, within MMP_RS02755 at 526.892 kb on + strand, within MMP_RS02755 at 526.915 kb on - strand, within MMP_RS02755 at 527.462 kb on + strand, within MMP_RS02755 at 527.525 kb on - strand, within MMP_RS02755 at 527.535 kb on + strand, within MMP_RS02755 at 527.642 kb on - strand, within MMP_RS02755 at 527.642 kb on - strand, within MMP_RS02755 at 527.643 kb on + strand, within MMP_RS02755 at 527.643 kb on + strand, within MMP_RS02755 at 527.665 kb on - strand, within MMP_RS02755 at 527.697 kb on + strand at 527.762 kb on + strand at 527.771 kb on - strand at 527.789 kb on + strand at 527.817 kb on + strand at 527.882 kb on - strand at 527.883 kb on + strand at 528.041 kb on + strand, within MMP_RS02760 at 528.084 kb on + strand, within MMP_RS02760 at 528.113 kb on - strand, within MMP_RS02760 at 528.114 kb on + strand, within MMP_RS02760 at 528.114 kb on + strand, within MMP_RS02760 at 528.146 kb on + strand, within MMP_RS02760 at 528.153 kb on + strand, within MMP_RS02760 at 528.173 kb on + strand, within MMP_RS02760 at 528.208 kb on - strand, within MMP_RS02760 at 528.295 kb on - strand, within MMP_RS02760 at 528.301 kb on - strand, within MMP_RS02760 at 528.302 kb on + strand, within MMP_RS02760 at 528.302 kb on + strand, within MMP_RS02760 at 528.359 kb on - strand, within MMP_RS02760 at 528.401 kb on - strand, within MMP_RS02760 at 528.419 kb on - strand, within MMP_RS02760 at 528.420 kb on + strand, within MMP_RS02760 at 528.478 kb on + strand, within MMP_RS02760 at 528.481 kb on - strand, within MMP_RS02760 at 528.493 kb on - strand, within MMP_RS02760 at 528.625 kb on - strand, within MMP_RS02760 at 528.718 kb on - strand, within MMP_RS02760 at 528.759 kb on + strand, within MMP_RS02760
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_H2_complete Antimycin A 0.01 mM remove 525,764 + MMP_RS02750 0.72 -0.7 526,322 - -0.8 526,433 + -2.1 526,452 + +0.6 526,493 + -1.8 526,497 - +0.3 526,518 - +0.2 526,519 + -0.1 526,519 + -0.3 526,519 + +0.5 526,520 - -0.3 526,521 + +1.3 526,522 - -0.8 526,522 - +0.9 526,522 - +2.7 526,522 - +0.1 526,522 - -0.5 526,522 - -0.1 526,522 - +0.8 526,667 - -1.5 526,736 - MMP_RS02755 0.14 +3.6 526,750 - MMP_RS02755 0.15 +0.5 526,751 + MMP_RS02755 0.15 +1.7 526,857 + MMP_RS02755 0.23 -0.3 526,892 + MMP_RS02755 0.26 +0.5 526,915 - MMP_RS02755 0.28 +0.6 527,462 + MMP_RS02755 0.72 -0.2 527,525 - MMP_RS02755 0.77 +2.3 527,535 + MMP_RS02755 0.78 -2.0 527,642 - MMP_RS02755 0.86 +0.1 527,642 - MMP_RS02755 0.86 +1.0 527,643 + MMP_RS02755 0.86 +0.2 527,643 + MMP_RS02755 0.86 +0.5 527,665 - MMP_RS02755 0.88 -0.8 527,697 + +0.8 527,762 + +1.0 527,771 - -1.0 527,789 + +2.0 527,817 + -0.0 527,882 - +2.2 527,883 + -0.5 528,041 + MMP_RS02760 0.16 +1.3 528,084 + MMP_RS02760 0.20 +2.0 528,113 - MMP_RS02760 0.22 +0.9 528,114 + MMP_RS02760 0.22 +0.1 528,114 + MMP_RS02760 0.22 +1.6 528,146 + MMP_RS02760 0.24 -0.4 528,153 + MMP_RS02760 0.25 +0.8 528,173 + MMP_RS02760 0.26 +0.0 528,208 - MMP_RS02760 0.29 +1.5 528,295 - MMP_RS02760 0.36 +0.4 528,301 - MMP_RS02760 0.36 -1.9 528,302 + MMP_RS02760 0.36 +0.4 528,302 + MMP_RS02760 0.36 +1.1 528,359 - MMP_RS02760 0.41 +1.5 528,401 - MMP_RS02760 0.44 +0.5 528,419 - MMP_RS02760 0.45 -1.3 528,420 + MMP_RS02760 0.45 +1.1 528,478 + MMP_RS02760 0.50 -1.3 528,481 - MMP_RS02760 0.50 +0.2 528,493 - MMP_RS02760 0.51 +0.7 528,625 - MMP_RS02760 0.61 +0.7 528,718 - MMP_RS02760 0.68 +2.0 528,759 + MMP_RS02760 0.71 -1.6
Or see this region's nucleotide sequence