Strain Fitness in Methanococcus maripaludis S2 around MMP_RS02655

Experiment: McCas_H2_complete Antimycin A 0.01 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS02645 and MMP_RS08945 are separated by 112 nucleotidesMMP_RS08945 and MMP_RS02650 are separated by 38 nucleotidesMMP_RS02650 and MMP_RS02655 are separated by 145 nucleotidesMMP_RS02655 and MMP_RS02660 are separated by 460 nucleotides MMP_RS02645: MMP_RS02645 - ArsR family transcriptional regulator, at 502,790 to 503,530 _RS02645 MMP_RS08945: MMP_RS08945 - hypothetical protein, at 503,643 to 503,786 _RS08945 MMP_RS02650: MMP_RS02650 - flavodoxin family protein, at 503,825 to 504,376 _RS02650 MMP_RS02655: MMP_RS02655 - terpene cyclase/mutase family protein, at 504,522 to 506,024 _RS02655 MMP_RS02660: MMP_RS02660 - hypothetical protein, at 506,485 to 507,573 _RS02660 Position (kb) 504 505 506 507Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 503.535 kb on + strandat 503.546 kb on + strandat 503.553 kb on - strandat 503.556 kb on + strandat 503.562 kb on - strandat 503.563 kb on + strandat 503.612 kb on - strandat 503.613 kb on + strandat 503.633 kb on + strandat 503.640 kb on + strandat 503.642 kb on - strandat 503.643 kb on + strandat 503.673 kb on + strand, within MMP_RS08945at 503.673 kb on + strand, within MMP_RS08945at 503.714 kb on + strand, within MMP_RS08945at 503.720 kb on - strand, within MMP_RS08945at 503.720 kb on - strand, within MMP_RS08945at 503.721 kb on + strand, within MMP_RS08945at 503.721 kb on + strand, within MMP_RS08945at 503.732 kb on - strand, within MMP_RS08945at 503.732 kb on - strand, within MMP_RS08945at 503.732 kb on - strand, within MMP_RS08945at 503.733 kb on + strand, within MMP_RS08945at 503.733 kb on + strand, within MMP_RS08945at 503.733 kb on + strand, within MMP_RS08945at 503.734 kb on - strand, within MMP_RS08945at 503.734 kb on - strand, within MMP_RS08945at 503.735 kb on + strand, within MMP_RS08945at 503.735 kb on + strand, within MMP_RS08945at 503.735 kb on + strand, within MMP_RS08945at 503.759 kb on - strand, within MMP_RS08945at 503.778 kb on + strandat 503.785 kb on + strandat 503.785 kb on + strandat 503.812 kb on + strandat 503.812 kb on + strandat 503.833 kb on - strandat 503.928 kb on - strand, within MMP_RS02650at 503.929 kb on + strand, within MMP_RS02650at 503.954 kb on + strand, within MMP_RS02650at 503.954 kb on + strand, within MMP_RS02650at 503.983 kb on - strand, within MMP_RS02650at 504.017 kb on + strand, within MMP_RS02650at 504.125 kb on - strand, within MMP_RS02650at 504.132 kb on - strand, within MMP_RS02650at 504.186 kb on + strand, within MMP_RS02650at 504.224 kb on - strand, within MMP_RS02650at 504.225 kb on + strand, within MMP_RS02650at 504.264 kb on - strand, within MMP_RS02650at 504.424 kb on - strandat 504.425 kb on + strandat 504.427 kb on + strandat 504.457 kb on + strandat 504.506 kb on - strandat 504.528 kb on + strandat 504.568 kb on - strandat 504.568 kb on - strandat 504.569 kb on + strandat 504.569 kb on + strandat 504.569 kb on + strandat 504.572 kb on - strandat 504.725 kb on + strand, within MMP_RS02655at 504.746 kb on + strand, within MMP_RS02655at 504.795 kb on - strand, within MMP_RS02655at 504.801 kb on - strand, within MMP_RS02655at 504.818 kb on - strand, within MMP_RS02655at 504.836 kb on + strand, within MMP_RS02655at 504.837 kb on - strand, within MMP_RS02655at 504.837 kb on - strand, within MMP_RS02655at 504.838 kb on + strand, within MMP_RS02655at 504.838 kb on + strand, within MMP_RS02655at 504.838 kb on + strand, within MMP_RS02655at 504.870 kb on + strand, within MMP_RS02655at 504.891 kb on - strand, within MMP_RS02655at 504.892 kb on + strand, within MMP_RS02655at 504.954 kb on - strand, within MMP_RS02655at 504.955 kb on + strand, within MMP_RS02655at 504.960 kb on + strand, within MMP_RS02655at 505.018 kb on - strand, within MMP_RS02655at 505.018 kb on - strand, within MMP_RS02655at 505.019 kb on + strand, within MMP_RS02655at 505.019 kb on + strand, within MMP_RS02655at 505.019 kb on + strand, within MMP_RS02655at 505.020 kb on - strand, within MMP_RS02655at 505.020 kb on - strand, within MMP_RS02655at 505.021 kb on + strand, within MMP_RS02655at 505.064 kb on - strand, within MMP_RS02655at 505.064 kb on - strand, within MMP_RS02655at 505.068 kb on - strand, within MMP_RS02655at 505.094 kb on + strand, within MMP_RS02655at 505.101 kb on - strand, within MMP_RS02655at 505.130 kb on + strand, within MMP_RS02655at 505.154 kb on + strand, within MMP_RS02655at 505.206 kb on - strand, within MMP_RS02655at 505.231 kb on - strand, within MMP_RS02655at 505.263 kb on + strand, within MMP_RS02655at 505.311 kb on + strand, within MMP_RS02655at 505.341 kb on + strand, within MMP_RS02655at 505.485 kb on - strand, within MMP_RS02655at 505.534 kb on + strand, within MMP_RS02655at 505.627 kb on - strand, within MMP_RS02655at 506.107 kb on - strandat 506.156 kb on - strandat 506.209 kb on - strandat 506.253 kb on - strandat 506.261 kb on + strandat 506.411 kb on + strandat 506.447 kb on - strandat 506.668 kb on - strand, within MMP_RS02660at 506.670 kb on - strand, within MMP_RS02660at 506.670 kb on - strand, within MMP_RS02660at 506.674 kb on - strand, within MMP_RS02660at 506.755 kb on + strand, within MMP_RS02660at 506.762 kb on + strand, within MMP_RS02660at 506.764 kb on + strand, within MMP_RS02660at 506.766 kb on - strand, within MMP_RS02660at 506.767 kb on + strand, within MMP_RS02660at 506.770 kb on - strand, within MMP_RS02660at 506.770 kb on - strand, within MMP_RS02660at 506.771 kb on + strand, within MMP_RS02660at 506.771 kb on + strand, within MMP_RS02660at 506.776 kb on + strand, within MMP_RS02660at 506.813 kb on - strand, within MMP_RS02660at 506.857 kb on + strand, within MMP_RS02660at 506.938 kb on + strand, within MMP_RS02660at 507.000 kb on - strand, within MMP_RS02660at 507.001 kb on + strand, within MMP_RS02660at 507.015 kb on - strand, within MMP_RS02660at 507.016 kb on + strand, within MMP_RS02660

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Per-strain Table

Position Strand Gene LocusTag Fraction McCas_H2_complete Antimycin A 0.01 mM
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503,535 + +0.3
503,546 + +0.2
503,553 - +0.3
503,556 + +1.3
503,562 - +0.6
503,563 + +1.1
503,612 - +0.8
503,613 + +0.5
503,633 + +1.3
503,640 + +0.8
503,642 - -1.8
503,643 + +0.3
503,673 + MMP_RS08945 0.21 +0.0
503,673 + MMP_RS08945 0.21 -0.3
503,714 + MMP_RS08945 0.49 +0.1
503,720 - MMP_RS08945 0.53 +0.6
503,720 - MMP_RS08945 0.53 +1.2
503,721 + MMP_RS08945 0.54 -0.1
503,721 + MMP_RS08945 0.54 +1.1
503,732 - MMP_RS08945 0.62 +0.8
503,732 - MMP_RS08945 0.62 +0.4
503,732 - MMP_RS08945 0.62 +1.4
503,733 + MMP_RS08945 0.62 +0.0
503,733 + MMP_RS08945 0.62 +0.1
503,733 + MMP_RS08945 0.62 -0.6
503,734 - MMP_RS08945 0.63 +0.7
503,734 - MMP_RS08945 0.63 -1.1
503,735 + MMP_RS08945 0.64 +0.4
503,735 + MMP_RS08945 0.64 +1.1
503,735 + MMP_RS08945 0.64 +1.0
503,759 - MMP_RS08945 0.81 -0.3
503,778 + +0.4
503,785 + +1.0
503,785 + +0.6
503,812 + +0.2
503,812 + +2.3
503,833 - +0.8
503,928 - MMP_RS02650 0.19 -5.0
503,929 + MMP_RS02650 0.19 +0.7
503,954 + MMP_RS02650 0.23 +0.1
503,954 + MMP_RS02650 0.23 +0.4
503,983 - MMP_RS02650 0.29 +0.4
504,017 + MMP_RS02650 0.35 +1.3
504,125 - MMP_RS02650 0.54 +0.7
504,132 - MMP_RS02650 0.56 -0.2
504,186 + MMP_RS02650 0.65 -3.5
504,224 - MMP_RS02650 0.72 -1.0
504,225 + MMP_RS02650 0.72 +0.6
504,264 - MMP_RS02650 0.80 -0.3
504,424 - +1.0
504,425 + +1.0
504,427 + +1.0
504,457 + +0.8
504,506 - +1.7
504,528 + -0.1
504,568 - +1.1
504,568 - +1.2
504,569 + -0.0
504,569 + -1.2
504,569 + +0.6
504,572 - -0.1
504,725 + MMP_RS02655 0.14 +0.1
504,746 + MMP_RS02655 0.15 +1.0
504,795 - MMP_RS02655 0.18 +0.9
504,801 - MMP_RS02655 0.19 +2.7
504,818 - MMP_RS02655 0.20 -0.4
504,836 + MMP_RS02655 0.21 +0.0
504,837 - MMP_RS02655 0.21 +0.0
504,837 - MMP_RS02655 0.21 +0.8
504,838 + MMP_RS02655 0.21 -0.5
504,838 + MMP_RS02655 0.21 -0.2
504,838 + MMP_RS02655 0.21 +0.0
504,870 + MMP_RS02655 0.23 -0.1
504,891 - MMP_RS02655 0.25 +1.0
504,892 + MMP_RS02655 0.25 +0.9
504,954 - MMP_RS02655 0.29 +0.3
504,955 + MMP_RS02655 0.29 -0.8
504,960 + MMP_RS02655 0.29 +0.3
505,018 - MMP_RS02655 0.33 -0.1
505,018 - MMP_RS02655 0.33 +0.8
505,019 + MMP_RS02655 0.33 +1.5
505,019 + MMP_RS02655 0.33 -0.1
505,019 + MMP_RS02655 0.33 +1.1
505,020 - MMP_RS02655 0.33 +0.6
505,020 - MMP_RS02655 0.33 +1.2
505,021 + MMP_RS02655 0.33 -0.3
505,064 - MMP_RS02655 0.36 +1.4
505,064 - MMP_RS02655 0.36 -1.0
505,068 - MMP_RS02655 0.36 +1.8
505,094 + MMP_RS02655 0.38 -1.8
505,101 - MMP_RS02655 0.39 +0.9
505,130 + MMP_RS02655 0.40 +0.7
505,154 + MMP_RS02655 0.42 +0.3
505,206 - MMP_RS02655 0.46 +0.6
505,231 - MMP_RS02655 0.47 +0.7
505,263 + MMP_RS02655 0.49 -0.3
505,311 + MMP_RS02655 0.52 +1.5
505,341 + MMP_RS02655 0.54 -0.8
505,485 - MMP_RS02655 0.64 +0.9
505,534 + MMP_RS02655 0.67 +2.0
505,627 - MMP_RS02655 0.74 +0.4
506,107 - +1.1
506,156 - +0.1
506,209 - +0.9
506,253 - +0.8
506,261 + +0.0
506,411 + +0.7
506,447 - -0.0
506,668 - MMP_RS02660 0.17 +0.3
506,670 - MMP_RS02660 0.17 -1.5
506,670 - MMP_RS02660 0.17 +0.7
506,674 - MMP_RS02660 0.17 +1.0
506,755 + MMP_RS02660 0.25 +0.3
506,762 + MMP_RS02660 0.25 +0.3
506,764 + MMP_RS02660 0.26 +1.8
506,766 - MMP_RS02660 0.26 +0.3
506,767 + MMP_RS02660 0.26 +1.6
506,770 - MMP_RS02660 0.26 +0.7
506,770 - MMP_RS02660 0.26 -0.3
506,771 + MMP_RS02660 0.26 +0.8
506,771 + MMP_RS02660 0.26 +0.4
506,776 + MMP_RS02660 0.27 +0.3
506,813 - MMP_RS02660 0.30 +1.0
506,857 + MMP_RS02660 0.34 -0.3
506,938 + MMP_RS02660 0.42 +0.8
507,000 - MMP_RS02660 0.47 +2.5
507,001 + MMP_RS02660 0.47 +2.2
507,015 - MMP_RS02660 0.49 +0.3
507,016 + MMP_RS02660 0.49 +0.6

Or see this region's nucleotide sequence