Experiment: McCas_H2_complete Antimycin A 0.01 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS02370 and MMP_RS02375 are separated by 33 nucleotides MMP_RS02375 and MMP_RS02380 are separated by 156 nucleotides MMP_RS02380 and MMP_RS02385 overlap by 4 nucleotides MMP_RS02385 and MMP_RS02390 are separated by 9 nucleotides
MMP_RS02370: MMP_RS02370 - NifB/NifX family molybdenum-iron cluster-binding protein, at 442,530 to 442,889
_RS02370
MMP_RS02375: MMP_RS02375 - hypothetical protein, at 442,923 to 443,207
_RS02375
MMP_RS02380: MMP_RS02380 - ATP-binding protein, at 443,364 to 444,209
_RS02380
MMP_RS02385: MMP_RS02385 - ATP-binding protein, at 444,206 to 445,063
_RS02385
MMP_RS02390: MMP_RS02390 - NifB/NifX family molybdenum-iron cluster-binding protein, at 445,073 to 445,432
_RS02390
Position (kb) 443
444
445 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 442.418 kb on - strand at 442.418 kb on - strand at 442.418 kb on - strand at 442.418 kb on - strand at 442.418 kb on - strand at 442.418 kb on - strand at 442.418 kb on - strand at 442.418 kb on - strand at 442.418 kb on - strand at 442.418 kb on - strand at 442.418 kb on - strand at 442.418 kb on - strand at 442.418 kb on - strand at 442.418 kb on - strand at 442.419 kb on + strand at 442.419 kb on + strand at 442.419 kb on + strand at 442.419 kb on + strand at 442.419 kb on + strand at 442.419 kb on + strand at 442.422 kb on - strand at 442.423 kb on + strand at 442.455 kb on + strand at 442.481 kb on - strand at 442.481 kb on - strand at 442.483 kb on - strand at 442.484 kb on + strand at 442.488 kb on + strand at 442.490 kb on - strand at 442.494 kb on - strand at 442.557 kb on - strand at 442.581 kb on - strand, within MMP_RS02370 at 442.582 kb on + strand, within MMP_RS02370 at 442.605 kb on - strand, within MMP_RS02370 at 442.605 kb on - strand, within MMP_RS02370 at 442.662 kb on - strand, within MMP_RS02370 at 442.788 kb on - strand, within MMP_RS02370 at 442.870 kb on + strand at 442.882 kb on + strand at 443.035 kb on + strand, within MMP_RS02375 at 443.040 kb on + strand, within MMP_RS02375 at 443.043 kb on - strand, within MMP_RS02375 at 443.044 kb on + strand, within MMP_RS02375 at 443.058 kb on - strand, within MMP_RS02375 at 443.060 kb on - strand, within MMP_RS02375 at 443.061 kb on + strand, within MMP_RS02375 at 443.088 kb on + strand, within MMP_RS02375 at 443.145 kb on - strand, within MMP_RS02375 at 443.149 kb on - strand, within MMP_RS02375 at 443.159 kb on - strand, within MMP_RS02375 at 443.159 kb on - strand, within MMP_RS02375 at 443.163 kb on - strand, within MMP_RS02375 at 443.227 kb on + strand at 443.231 kb on - strand at 443.231 kb on - strand at 443.231 kb on - strand at 443.231 kb on - strand at 443.232 kb on + strand at 443.232 kb on + strand at 443.232 kb on + strand at 443.232 kb on + strand at 443.232 kb on + strand at 443.232 kb on + strand at 443.240 kb on + strand at 443.242 kb on - strand at 443.274 kb on - strand at 443.293 kb on + strand at 443.294 kb on - strand at 443.574 kb on - strand, within MMP_RS02380 at 443.575 kb on + strand, within MMP_RS02380 at 443.769 kb on + strand, within MMP_RS02380 at 443.807 kb on - strand, within MMP_RS02380 at 443.854 kb on - strand, within MMP_RS02380 at 443.953 kb on + strand, within MMP_RS02380 at 444.023 kb on - strand, within MMP_RS02380 at 444.081 kb on - strand, within MMP_RS02380 at 444.241 kb on - strand at 444.300 kb on - strand, within MMP_RS02385 at 444.305 kb on + strand, within MMP_RS02385 at 444.535 kb on - strand, within MMP_RS02385 at 444.536 kb on + strand, within MMP_RS02385 at 444.578 kb on + strand, within MMP_RS02385 at 444.578 kb on + strand, within MMP_RS02385 at 444.606 kb on + strand, within MMP_RS02385 at 444.828 kb on + strand, within MMP_RS02385 at 444.964 kb on + strand, within MMP_RS02385 at 444.964 kb on + strand, within MMP_RS02385 at 445.010 kb on + strand at 445.014 kb on + strand at 445.050 kb on + strand at 445.057 kb on - strand at 445.078 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_H2_complete Antimycin A 0.01 mM remove 442,418 - -2.4 442,418 - +0.1 442,418 - -0.8 442,418 - -1.2 442,418 - +0.7 442,418 - +0.9 442,418 - +1.4 442,418 - +0.9 442,418 - +0.1 442,418 - +0.6 442,418 - +0.9 442,418 - -0.5 442,418 - -0.3 442,418 - +1.0 442,419 + -0.2 442,419 + +1.1 442,419 + +0.7 442,419 + +0.3 442,419 + -0.6 442,419 + +0.0 442,422 - +1.8 442,423 + -1.0 442,455 + -0.4 442,481 - -3.5 442,481 - +1.2 442,483 - +0.8 442,484 + -1.3 442,488 + +0.8 442,490 - +2.0 442,494 - -0.1 442,557 - +0.7 442,581 - MMP_RS02370 0.14 +0.5 442,582 + MMP_RS02370 0.14 +1.2 442,605 - MMP_RS02370 0.21 +0.5 442,605 - MMP_RS02370 0.21 +2.2 442,662 - MMP_RS02370 0.37 +2.4 442,788 - MMP_RS02370 0.72 -0.8 442,870 + +2.4 442,882 + -0.5 443,035 + MMP_RS02375 0.39 +0.2 443,040 + MMP_RS02375 0.41 +1.6 443,043 - MMP_RS02375 0.42 +0.5 443,044 + MMP_RS02375 0.42 +0.4 443,058 - MMP_RS02375 0.47 +0.8 443,060 - MMP_RS02375 0.48 -0.3 443,061 + MMP_RS02375 0.48 +0.9 443,088 + MMP_RS02375 0.58 +1.1 443,145 - MMP_RS02375 0.78 +1.8 443,149 - MMP_RS02375 0.79 -0.2 443,159 - MMP_RS02375 0.83 +0.0 443,159 - MMP_RS02375 0.83 +1.8 443,163 - MMP_RS02375 0.84 +0.5 443,227 + -1.4 443,231 - -0.1 443,231 - -0.4 443,231 - +0.8 443,231 - -0.1 443,232 + +0.5 443,232 + -1.7 443,232 + +0.7 443,232 + +0.1 443,232 + -0.1 443,232 + +0.2 443,240 + -1.6 443,242 - -2.3 443,274 - +1.2 443,293 + -2.3 443,294 - -0.4 443,574 - MMP_RS02380 0.25 +0.5 443,575 + MMP_RS02380 0.25 +1.1 443,769 + MMP_RS02380 0.48 +1.4 443,807 - MMP_RS02380 0.52 +0.7 443,854 - MMP_RS02380 0.58 +0.0 443,953 + MMP_RS02380 0.70 +1.7 444,023 - MMP_RS02380 0.78 +0.1 444,081 - MMP_RS02380 0.85 +0.8 444,241 - +0.3 444,300 - MMP_RS02385 0.11 +1.1 444,305 + MMP_RS02385 0.12 +0.8 444,535 - MMP_RS02385 0.38 -1.5 444,536 + MMP_RS02385 0.38 +1.4 444,578 + MMP_RS02385 0.43 +0.5 444,578 + MMP_RS02385 0.43 -0.3 444,606 + MMP_RS02385 0.47 +1.0 444,828 + MMP_RS02385 0.72 +2.1 444,964 + MMP_RS02385 0.88 +1.0 444,964 + MMP_RS02385 0.88 +0.4 445,010 + +1.5 445,014 + +1.0 445,050 + +3.8 445,057 - +0.3 445,078 - +0.5
Or see this region's nucleotide sequence