Experiment: McCas_H2_complete Antimycin A 0.01 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS02250 and MMP_RS02255 are separated by 126 nucleotides MMP_RS02255 and MMP_RS02260 are separated by 406 nucleotides
MMP_RS02250: MMP_RS02250 - FRG domain-containing protein, at 424,800 to 426,188
_RS02250
MMP_RS02255: MMP_RS02255 - hypothetical protein, at 426,315 to 426,530
_RS02255
MMP_RS02260: MMP_RS02260 - lactate utilization protein, at 426,937 to 427,578
_RS02260
Position (kb) 426
427 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 425.372 kb on + strand, within MMP_RS02250 at 425.401 kb on + strand, within MMP_RS02250 at 425.472 kb on + strand, within MMP_RS02250 at 425.477 kb on + strand, within MMP_RS02250 at 425.481 kb on - strand, within MMP_RS02250 at 425.525 kb on - strand, within MMP_RS02250 at 425.525 kb on - strand, within MMP_RS02250 at 425.525 kb on - strand, within MMP_RS02250 at 425.530 kb on - strand, within MMP_RS02250 at 425.530 kb on - strand, within MMP_RS02250 at 425.556 kb on + strand, within MMP_RS02250 at 425.779 kb on - strand, within MMP_RS02250 at 425.780 kb on + strand, within MMP_RS02250 at 425.780 kb on + strand, within MMP_RS02250 at 425.841 kb on + strand, within MMP_RS02250 at 425.868 kb on - strand, within MMP_RS02250 at 425.904 kb on + strand, within MMP_RS02250 at 426.002 kb on - strand, within MMP_RS02250 at 426.008 kb on - strand, within MMP_RS02250 at 426.026 kb on - strand, within MMP_RS02250 at 426.026 kb on - strand, within MMP_RS02250 at 426.027 kb on + strand, within MMP_RS02250 at 426.027 kb on + strand, within MMP_RS02250 at 426.062 kb on - strand at 426.063 kb on + strand at 426.186 kb on - strand at 426.221 kb on + strand at 426.385 kb on - strand, within MMP_RS02255 at 426.402 kb on + strand, within MMP_RS02255 at 426.402 kb on + strand, within MMP_RS02255 at 426.456 kb on - strand, within MMP_RS02255 at 426.461 kb on - strand, within MMP_RS02255 at 426.486 kb on + strand, within MMP_RS02255 at 426.506 kb on - strand, within MMP_RS02255 at 426.506 kb on - strand, within MMP_RS02255 at 426.567 kb on - strand at 426.568 kb on + strand at 426.571 kb on - strand at 426.578 kb on + strand at 426.609 kb on + strand at 426.613 kb on - strand at 426.654 kb on + strand at 426.672 kb on + strand at 426.688 kb on - strand at 426.733 kb on + strand at 426.780 kb on - strand at 426.842 kb on - strand at 426.868 kb on - strand at 426.869 kb on + strand at 426.874 kb on - strand at 426.874 kb on - strand at 426.874 kb on - strand at 426.875 kb on + strand at 426.875 kb on + strand at 426.883 kb on - strand at 426.884 kb on + strand at 427.051 kb on - strand, within MMP_RS02260 at 427.051 kb on - strand, within MMP_RS02260 at 427.052 kb on + strand, within MMP_RS02260 at 427.053 kb on - strand, within MMP_RS02260 at 427.063 kb on - strand, within MMP_RS02260 at 427.064 kb on + strand, within MMP_RS02260 at 427.123 kb on + strand, within MMP_RS02260 at 427.204 kb on + strand, within MMP_RS02260 at 427.204 kb on + strand, within MMP_RS02260 at 427.205 kb on - strand, within MMP_RS02260 at 427.205 kb on - strand, within MMP_RS02260 at 427.232 kb on - strand, within MMP_RS02260 at 427.236 kb on - strand, within MMP_RS02260 at 427.277 kb on - strand, within MMP_RS02260 at 427.277 kb on - strand, within MMP_RS02260 at 427.356 kb on - strand, within MMP_RS02260 at 427.469 kb on - strand, within MMP_RS02260 at 427.505 kb on + strand, within MMP_RS02260 at 427.516 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_H2_complete Antimycin A 0.01 mM remove 425,372 + MMP_RS02250 0.41 -0.6 425,401 + MMP_RS02250 0.43 +0.2 425,472 + MMP_RS02250 0.48 +1.4 425,477 + MMP_RS02250 0.49 -0.7 425,481 - MMP_RS02250 0.49 +0.3 425,525 - MMP_RS02250 0.52 -0.7 425,525 - MMP_RS02250 0.52 +0.9 425,525 - MMP_RS02250 0.52 -0.6 425,530 - MMP_RS02250 0.53 -0.3 425,530 - MMP_RS02250 0.53 -1.3 425,556 + MMP_RS02250 0.54 -1.0 425,779 - MMP_RS02250 0.70 -0.4 425,780 + MMP_RS02250 0.71 +0.7 425,780 + MMP_RS02250 0.71 +0.3 425,841 + MMP_RS02250 0.75 +0.2 425,868 - MMP_RS02250 0.77 -0.2 425,904 + MMP_RS02250 0.79 +0.5 426,002 - MMP_RS02250 0.87 +1.9 426,008 - MMP_RS02250 0.87 +1.1 426,026 - MMP_RS02250 0.88 -2.3 426,026 - MMP_RS02250 0.88 +0.6 426,027 + MMP_RS02250 0.88 +1.6 426,027 + MMP_RS02250 0.88 +0.4 426,062 - -1.0 426,063 + -1.3 426,186 - +1.4 426,221 + +0.7 426,385 - MMP_RS02255 0.32 +0.9 426,402 + MMP_RS02255 0.40 -1.2 426,402 + MMP_RS02255 0.40 -2.0 426,456 - MMP_RS02255 0.65 +0.3 426,461 - MMP_RS02255 0.68 -0.1 426,486 + MMP_RS02255 0.79 +1.5 426,506 - MMP_RS02255 0.88 -0.5 426,506 - MMP_RS02255 0.88 +2.1 426,567 - -2.8 426,568 + +1.7 426,571 - -0.1 426,578 + +0.2 426,609 + +0.8 426,613 - -2.2 426,654 + +1.0 426,672 + +2.3 426,688 - -1.8 426,733 + +1.8 426,780 - +0.5 426,842 - -0.9 426,868 - -1.4 426,869 + -1.7 426,874 - -1.6 426,874 - +0.3 426,874 - +1.0 426,875 + -0.4 426,875 + +0.4 426,883 - -0.4 426,884 + +0.3 427,051 - MMP_RS02260 0.18 +0.5 427,051 - MMP_RS02260 0.18 +1.0 427,052 + MMP_RS02260 0.18 +0.5 427,053 - MMP_RS02260 0.18 +2.3 427,063 - MMP_RS02260 0.20 +0.8 427,064 + MMP_RS02260 0.20 -0.5 427,123 + MMP_RS02260 0.29 +2.5 427,204 + MMP_RS02260 0.42 +0.6 427,204 + MMP_RS02260 0.42 -0.3 427,205 - MMP_RS02260 0.42 -0.1 427,205 - MMP_RS02260 0.42 -0.5 427,232 - MMP_RS02260 0.46 +0.1 427,236 - MMP_RS02260 0.47 +0.3 427,277 - MMP_RS02260 0.53 +1.3 427,277 - MMP_RS02260 0.53 -1.1 427,356 - MMP_RS02260 0.65 -0.5 427,469 - MMP_RS02260 0.83 -0.1 427,505 + MMP_RS02260 0.88 -0.5 427,516 + +1.5
Or see this region's nucleotide sequence