Strain Fitness in Methanococcus maripaludis S2 around MMP_RS01975

Experiment: McCas_H2_complete Antimycin A 0.01 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS01970 and MMP_RS01975 are separated by 44 nucleotidesMMP_RS01975 and MMP_RS01980 are separated by 133 nucleotidesMMP_RS01980 and MMP_RS01985 are separated by 79 nucleotides MMP_RS01970: MMP_RS01970 - TIGR04279 domain-containing protein, at 364,974 to 366,938 _RS01970 MMP_RS01975: MMP_RS01975 - hypothetical protein, at 366,983 to 368,389 _RS01975 MMP_RS01980: MMP_RS01980 - trimeric intracellular cation channel family protein, at 368,523 to 369,152 _RS01980 MMP_RS01985: MMP_RS01985 - F420-dependent methylenetetrahydromethanopterin dehydrogenase, at 369,232 to 370,065 _RS01985 Position (kb) 366 367 368 369Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1 2 3at 366.060 kb on + strand, within MMP_RS01970at 366.063 kb on + strand, within MMP_RS01970at 366.063 kb on + strand, within MMP_RS01970at 366.079 kb on + strand, within MMP_RS01970at 366.106 kb on - strand, within MMP_RS01970at 366.134 kb on - strand, within MMP_RS01970at 366.142 kb on - strand, within MMP_RS01970at 366.143 kb on + strand, within MMP_RS01970at 366.487 kb on + strand, within MMP_RS01970at 366.515 kb on - strand, within MMP_RS01970at 366.578 kb on + strand, within MMP_RS01970at 366.578 kb on + strand, within MMP_RS01970at 366.578 kb on + strand, within MMP_RS01970at 366.578 kb on + strand, within MMP_RS01970at 366.634 kb on - strand, within MMP_RS01970at 366.634 kb on - strand, within MMP_RS01970at 366.634 kb on - strand, within MMP_RS01970at 366.634 kb on - strand, within MMP_RS01970at 366.634 kb on - strand, within MMP_RS01970at 366.634 kb on - strand, within MMP_RS01970at 366.635 kb on + strand, within MMP_RS01970at 366.635 kb on + strand, within MMP_RS01970at 366.635 kb on + strand, within MMP_RS01970at 366.635 kb on + strand, within MMP_RS01970at 366.635 kb on + strand, within MMP_RS01970at 366.635 kb on + strand, within MMP_RS01970at 366.639 kb on + strand, within MMP_RS01970at 366.703 kb on - strand, within MMP_RS01970at 366.704 kb on + strand, within MMP_RS01970at 366.752 kb on + strandat 366.787 kb on - strandat 366.803 kb on + strandat 366.874 kb on - strandat 366.887 kb on + strandat 366.948 kb on - strandat 366.962 kb on - strandat 367.164 kb on - strand, within MMP_RS01975at 367.191 kb on - strand, within MMP_RS01975at 367.191 kb on - strand, within MMP_RS01975at 367.193 kb on - strand, within MMP_RS01975at 367.194 kb on + strand, within MMP_RS01975at 367.263 kb on - strand, within MMP_RS01975at 367.264 kb on + strand, within MMP_RS01975at 367.264 kb on + strand, within MMP_RS01975at 367.264 kb on + strand, within MMP_RS01975at 367.312 kb on - strand, within MMP_RS01975at 367.358 kb on - strand, within MMP_RS01975at 367.405 kb on - strand, within MMP_RS01975at 367.406 kb on + strand, within MMP_RS01975at 367.469 kb on - strand, within MMP_RS01975at 367.510 kb on + strand, within MMP_RS01975at 367.536 kb on - strand, within MMP_RS01975at 367.550 kb on + strand, within MMP_RS01975at 367.586 kb on + strand, within MMP_RS01975at 367.603 kb on - strand, within MMP_RS01975at 367.615 kb on - strand, within MMP_RS01975at 367.621 kb on + strand, within MMP_RS01975at 367.681 kb on + strand, within MMP_RS01975at 367.701 kb on + strand, within MMP_RS01975at 367.716 kb on + strand, within MMP_RS01975at 367.719 kb on - strand, within MMP_RS01975at 367.719 kb on - strand, within MMP_RS01975at 367.720 kb on + strand, within MMP_RS01975at 367.757 kb on - strand, within MMP_RS01975at 367.758 kb on + strand, within MMP_RS01975at 367.775 kb on - strand, within MMP_RS01975at 367.779 kb on - strand, within MMP_RS01975at 367.779 kb on - strand, within MMP_RS01975at 367.779 kb on - strand, within MMP_RS01975at 367.872 kb on - strand, within MMP_RS01975at 367.909 kb on - strand, within MMP_RS01975at 367.951 kb on - strand, within MMP_RS01975at 367.954 kb on + strand, within MMP_RS01975at 367.993 kb on + strand, within MMP_RS01975at 368.023 kb on + strand, within MMP_RS01975at 368.045 kb on + strand, within MMP_RS01975at 368.056 kb on - strand, within MMP_RS01975at 368.099 kb on - strand, within MMP_RS01975at 368.099 kb on - strand, within MMP_RS01975at 368.099 kb on - strand, within MMP_RS01975at 368.100 kb on + strand, within MMP_RS01975at 368.100 kb on + strand, within MMP_RS01975at 368.104 kb on + strand, within MMP_RS01975at 368.106 kb on - strand, within MMP_RS01975at 368.106 kb on - strand, within MMP_RS01975at 368.107 kb on + strand, within MMP_RS01975at 368.107 kb on + strand, within MMP_RS01975at 368.107 kb on + strand, within MMP_RS01975at 368.128 kb on - strand, within MMP_RS01975at 368.131 kb on - strand, within MMP_RS01975at 368.131 kb on - strand, within MMP_RS01975at 368.225 kb on - strand, within MMP_RS01975at 368.225 kb on - strand, within MMP_RS01975at 368.273 kb on - strandat 368.320 kb on + strandat 368.327 kb on + strandat 368.331 kb on - strandat 368.331 kb on - strandat 368.354 kb on + strandat 368.365 kb on + strandat 368.374 kb on + strandat 368.380 kb on - strandat 368.399 kb on - strandat 368.448 kb on - strandat 368.470 kb on + strandat 368.471 kb on - strandat 368.473 kb on - strandat 368.474 kb on + strandat 368.493 kb on - strandat 368.494 kb on + strandat 368.494 kb on + strandat 368.497 kb on - strandat 368.497 kb on - strandat 368.528 kb on - strandat 368.604 kb on + strand, within MMP_RS01980at 368.615 kb on + strand, within MMP_RS01980at 368.646 kb on + strand, within MMP_RS01980at 368.691 kb on + strand, within MMP_RS01980at 368.707 kb on - strand, within MMP_RS01980at 368.788 kb on - strand, within MMP_RS01980at 368.788 kb on - strand, within MMP_RS01980at 368.788 kb on - strand, within MMP_RS01980at 368.789 kb on + strand, within MMP_RS01980at 368.789 kb on + strand, within MMP_RS01980at 368.799 kb on - strand, within MMP_RS01980at 368.799 kb on - strand, within MMP_RS01980at 368.807 kb on + strand, within MMP_RS01980at 368.865 kb on - strand, within MMP_RS01980at 368.866 kb on + strand, within MMP_RS01980at 368.867 kb on - strand, within MMP_RS01980at 368.868 kb on + strand, within MMP_RS01980at 368.894 kb on + strand, within MMP_RS01980at 368.898 kb on + strand, within MMP_RS01980at 368.935 kb on - strand, within MMP_RS01980at 368.936 kb on + strand, within MMP_RS01980at 368.936 kb on + strand, within MMP_RS01980at 368.936 kb on + strand, within MMP_RS01980at 368.944 kb on - strand, within MMP_RS01980at 368.950 kb on - strand, within MMP_RS01980at 368.986 kb on + strand, within MMP_RS01980at 369.022 kb on + strand, within MMP_RS01980at 369.157 kb on - strandat 369.212 kb on - strandat 369.256 kb on + strandat 369.361 kb on - strand, within MMP_RS01985

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Per-strain Table

Position Strand Gene LocusTag Fraction McCas_H2_complete Antimycin A 0.01 mM
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366,060 + MMP_RS01970 0.55 -1.2
366,063 + MMP_RS01970 0.55 -0.0
366,063 + MMP_RS01970 0.55 -1.8
366,079 + MMP_RS01970 0.56 +0.4
366,106 - MMP_RS01970 0.58 -1.5
366,134 - MMP_RS01970 0.59 -0.8
366,142 - MMP_RS01970 0.59 -0.8
366,143 + MMP_RS01970 0.59 -1.9
366,487 + MMP_RS01970 0.77 +0.5
366,515 - MMP_RS01970 0.78 -1.1
366,578 + MMP_RS01970 0.82 -2.3
366,578 + MMP_RS01970 0.82 -2.4
366,578 + MMP_RS01970 0.82 -0.2
366,578 + MMP_RS01970 0.82 +0.2
366,634 - MMP_RS01970 0.84 -0.8
366,634 - MMP_RS01970 0.84 -5.1
366,634 - MMP_RS01970 0.84 -1.0
366,634 - MMP_RS01970 0.84 -2.4
366,634 - MMP_RS01970 0.84 -2.2
366,634 - MMP_RS01970 0.84 -5.0
366,635 + MMP_RS01970 0.85 -5.4
366,635 + MMP_RS01970 0.85 -1.3
366,635 + MMP_RS01970 0.85 -0.7
366,635 + MMP_RS01970 0.85 -0.6
366,635 + MMP_RS01970 0.85 -1.4
366,635 + MMP_RS01970 0.85 -1.8
366,639 + MMP_RS01970 0.85 -3.7
366,703 - MMP_RS01970 0.88 -4.6
366,704 + MMP_RS01970 0.88 -3.7
366,752 + -1.1
366,787 - -0.3
366,803 + +3.2
366,874 - -0.5
366,887 + -3.3
366,948 - -1.3
366,962 - -3.6
367,164 - MMP_RS01975 0.13 -1.5
367,191 - MMP_RS01975 0.15 -4.6
367,191 - MMP_RS01975 0.15 -4.4
367,193 - MMP_RS01975 0.15 -3.2
367,194 + MMP_RS01975 0.15 -3.5
367,263 - MMP_RS01975 0.20 -5.2
367,264 + MMP_RS01975 0.20 -1.5
367,264 + MMP_RS01975 0.20 +0.8
367,264 + MMP_RS01975 0.20 -1.7
367,312 - MMP_RS01975 0.23 -5.4
367,358 - MMP_RS01975 0.27 -2.1
367,405 - MMP_RS01975 0.30 -2.2
367,406 + MMP_RS01975 0.30 -2.3
367,469 - MMP_RS01975 0.35 -2.3
367,510 + MMP_RS01975 0.37 -0.6
367,536 - MMP_RS01975 0.39 -1.2
367,550 + MMP_RS01975 0.40 -1.5
367,586 + MMP_RS01975 0.43 -0.3
367,603 - MMP_RS01975 0.44 -2.0
367,615 - MMP_RS01975 0.45 -1.4
367,621 + MMP_RS01975 0.45 -1.9
367,681 + MMP_RS01975 0.50 -3.4
367,701 + MMP_RS01975 0.51 -2.0
367,716 + MMP_RS01975 0.52 -0.7
367,719 - MMP_RS01975 0.52 -2.7
367,719 - MMP_RS01975 0.52 -3.2
367,720 + MMP_RS01975 0.52 -1.3
367,757 - MMP_RS01975 0.55 -1.6
367,758 + MMP_RS01975 0.55 -0.9
367,775 - MMP_RS01975 0.56 -5.8
367,779 - MMP_RS01975 0.57 -2.7
367,779 - MMP_RS01975 0.57 -1.1
367,779 - MMP_RS01975 0.57 -2.9
367,872 - MMP_RS01975 0.63 -1.8
367,909 - MMP_RS01975 0.66 -1.8
367,951 - MMP_RS01975 0.69 -0.6
367,954 + MMP_RS01975 0.69 -3.4
367,993 + MMP_RS01975 0.72 -4.2
368,023 + MMP_RS01975 0.74 +0.1
368,045 + MMP_RS01975 0.75 -3.3
368,056 - MMP_RS01975 0.76 -1.7
368,099 - MMP_RS01975 0.79 -1.5
368,099 - MMP_RS01975 0.79 -2.8
368,099 - MMP_RS01975 0.79 -0.9
368,100 + MMP_RS01975 0.79 -1.8
368,100 + MMP_RS01975 0.79 -1.3
368,104 + MMP_RS01975 0.80 -2.5
368,106 - MMP_RS01975 0.80 -0.5
368,106 - MMP_RS01975 0.80 -0.6
368,107 + MMP_RS01975 0.80 -2.1
368,107 + MMP_RS01975 0.80 +2.5
368,107 + MMP_RS01975 0.80 -4.0
368,128 - MMP_RS01975 0.81 -1.5
368,131 - MMP_RS01975 0.82 -0.2
368,131 - MMP_RS01975 0.82 -3.2
368,225 - MMP_RS01975 0.88 -4.8
368,225 - MMP_RS01975 0.88 -0.8
368,273 - -2.0
368,320 + -3.6
368,327 + -1.4
368,331 - -1.6
368,331 - -2.7
368,354 + -0.5
368,365 + -1.1
368,374 + -0.1
368,380 - +0.5
368,399 - -6.4
368,448 - +1.1
368,470 + +1.0
368,471 - -0.7
368,473 - -4.2
368,474 + -1.9
368,493 - +1.5
368,494 + +1.0
368,494 + +1.0
368,497 - -0.3
368,497 - +0.5
368,528 - -1.2
368,604 + MMP_RS01980 0.13 -1.2
368,615 + MMP_RS01980 0.15 +0.3
368,646 + MMP_RS01980 0.20 +1.4
368,691 + MMP_RS01980 0.27 -2.0
368,707 - MMP_RS01980 0.29 +0.7
368,788 - MMP_RS01980 0.42 -0.6
368,788 - MMP_RS01980 0.42 +0.7
368,788 - MMP_RS01980 0.42 +0.4
368,789 + MMP_RS01980 0.42 +1.3
368,789 + MMP_RS01980 0.42 +0.9
368,799 - MMP_RS01980 0.44 -0.2
368,799 - MMP_RS01980 0.44 -0.7
368,807 + MMP_RS01980 0.45 +0.4
368,865 - MMP_RS01980 0.54 -0.8
368,866 + MMP_RS01980 0.54 +1.3
368,867 - MMP_RS01980 0.55 +1.3
368,868 + MMP_RS01980 0.55 +0.7
368,894 + MMP_RS01980 0.59 -0.9
368,898 + MMP_RS01980 0.60 -2.4
368,935 - MMP_RS01980 0.65 +0.2
368,936 + MMP_RS01980 0.66 +0.2
368,936 + MMP_RS01980 0.66 -0.1
368,936 + MMP_RS01980 0.66 -1.1
368,944 - MMP_RS01980 0.67 +0.2
368,950 - MMP_RS01980 0.68 +0.4
368,986 + MMP_RS01980 0.73 -0.5
369,022 + MMP_RS01980 0.79 +0.1
369,157 - +0.5
369,212 - -0.9
369,256 + -0.3
369,361 - MMP_RS01985 0.15 +1.1

Or see this region's nucleotide sequence