Experiment: McCas_H2_complete Antimycin A 0.01 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS01935 and MMP_RS01940 are separated by 3 nucleotides MMP_RS01940 and MMP_RS01945 overlap by 26 nucleotides MMP_RS01945 and MMP_RS01950 overlap by 1 nucleotides
MMP_RS01935: MMP_RS01935 - DUF58 domain-containing protein, at 358,253 to 359,554
_RS01935
MMP_RS01940: MMP_RS01940 - MoxR family ATPase, at 359,558 to 360,499
_RS01940
MMP_RS01945: MMP_RS01945 - DUF4350 domain-containing protein, at 360,474 to 361,472
_RS01945
MMP_RS01950: MMP_RS01950 - hypothetical protein, at 361,472 to 363,307
_RS01950
Position (kb) 359
360
361 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5 at 358.618 kb on - strand, within MMP_RS01935 at 358.621 kb on - strand, within MMP_RS01935 at 358.665 kb on + strand, within MMP_RS01935 at 358.670 kb on + strand, within MMP_RS01935 at 358.678 kb on - strand, within MMP_RS01935 at 358.679 kb on + strand, within MMP_RS01935 at 358.725 kb on + strand, within MMP_RS01935 at 358.725 kb on + strand, within MMP_RS01935 at 358.782 kb on - strand, within MMP_RS01935 at 358.783 kb on + strand, within MMP_RS01935 at 358.785 kb on - strand, within MMP_RS01935 at 358.785 kb on - strand, within MMP_RS01935 at 358.785 kb on - strand, within MMP_RS01935 at 358.786 kb on + strand, within MMP_RS01935 at 358.786 kb on + strand, within MMP_RS01935 at 358.787 kb on - strand, within MMP_RS01935 at 358.788 kb on + strand, within MMP_RS01935 at 358.811 kb on - strand, within MMP_RS01935 at 358.816 kb on + strand, within MMP_RS01935 at 358.816 kb on + strand, within MMP_RS01935 at 358.862 kb on + strand, within MMP_RS01935 at 358.864 kb on - strand, within MMP_RS01935 at 358.865 kb on + strand, within MMP_RS01935 at 358.957 kb on - strand, within MMP_RS01935 at 358.992 kb on + strand, within MMP_RS01935 at 358.992 kb on + strand, within MMP_RS01935 at 359.090 kb on + strand, within MMP_RS01935 at 359.117 kb on + strand, within MMP_RS01935 at 359.174 kb on - strand, within MMP_RS01935 at 359.174 kb on - strand, within MMP_RS01935 at 359.195 kb on - strand, within MMP_RS01935 at 359.445 kb on + strand at 359.445 kb on + strand at 359.446 kb on - strand at 359.446 kb on - strand at 359.446 kb on - strand at 359.447 kb on + strand at 359.483 kb on - strand at 359.483 kb on - strand at 359.486 kb on + strand at 359.529 kb on - strand at 359.529 kb on - strand at 359.529 kb on - strand at 359.591 kb on + strand at 359.662 kb on - strand, within MMP_RS01940 at 359.712 kb on - strand, within MMP_RS01940 at 359.789 kb on - strand, within MMP_RS01940 at 360.037 kb on + strand, within MMP_RS01940 at 360.099 kb on + strand, within MMP_RS01940 at 360.176 kb on + strand, within MMP_RS01940 at 360.180 kb on + strand, within MMP_RS01940 at 360.458 kb on - strand at 360.480 kb on + strand at 360.513 kb on - strand at 360.514 kb on + strand at 360.518 kb on - strand at 360.612 kb on + strand, within MMP_RS01945 at 360.649 kb on + strand, within MMP_RS01945 at 360.743 kb on - strand, within MMP_RS01945 at 360.884 kb on - strand, within MMP_RS01945 at 360.885 kb on + strand, within MMP_RS01945 at 360.901 kb on - strand, within MMP_RS01945 at 360.906 kb on - strand, within MMP_RS01945 at 360.907 kb on + strand, within MMP_RS01945 at 360.992 kb on + strand, within MMP_RS01945 at 360.995 kb on - strand, within MMP_RS01945 at 360.996 kb on + strand, within MMP_RS01945 at 361.013 kb on - strand, within MMP_RS01945 at 361.015 kb on - strand, within MMP_RS01945 at 361.045 kb on - strand, within MMP_RS01945 at 361.274 kb on + strand, within MMP_RS01945 at 361.282 kb on - strand, within MMP_RS01945 at 361.291 kb on - strand, within MMP_RS01945 at 361.292 kb on + strand, within MMP_RS01945 at 361.294 kb on + strand, within MMP_RS01945 at 361.294 kb on + strand, within MMP_RS01945
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_H2_complete Antimycin A 0.01 mM remove 358,618 - MMP_RS01935 0.28 -0.6 358,621 - MMP_RS01935 0.28 +0.5 358,665 + MMP_RS01935 0.32 -1.1 358,670 + MMP_RS01935 0.32 -1.9 358,678 - MMP_RS01935 0.33 -3.8 358,679 + MMP_RS01935 0.33 -0.6 358,725 + MMP_RS01935 0.36 +0.3 358,725 + MMP_RS01935 0.36 +0.8 358,782 - MMP_RS01935 0.41 +1.5 358,783 + MMP_RS01935 0.41 -1.5 358,785 - MMP_RS01935 0.41 -1.3 358,785 - MMP_RS01935 0.41 -0.9 358,785 - MMP_RS01935 0.41 -0.8 358,786 + MMP_RS01935 0.41 +0.1 358,786 + MMP_RS01935 0.41 +5.2 358,787 - MMP_RS01935 0.41 +2.1 358,788 + MMP_RS01935 0.41 -1.5 358,811 - MMP_RS01935 0.43 -1.9 358,816 + MMP_RS01935 0.43 +0.9 358,816 + MMP_RS01935 0.43 +1.2 358,862 + MMP_RS01935 0.47 -0.4 358,864 - MMP_RS01935 0.47 -1.2 358,865 + MMP_RS01935 0.47 +0.6 358,957 - MMP_RS01935 0.54 +1.2 358,992 + MMP_RS01935 0.57 -2.0 358,992 + MMP_RS01935 0.57 -0.5 359,090 + MMP_RS01935 0.64 -1.4 359,117 + MMP_RS01935 0.66 -0.3 359,174 - MMP_RS01935 0.71 -1.5 359,174 - MMP_RS01935 0.71 -1.2 359,195 - MMP_RS01935 0.72 -1.4 359,445 + +0.5 359,445 + +1.2 359,446 - -2.1 359,446 - -2.3 359,446 - +1.6 359,447 + +1.0 359,483 - -0.9 359,483 - -0.5 359,486 + +0.0 359,529 - -0.5 359,529 - -0.2 359,529 - -2.0 359,591 + +1.1 359,662 - MMP_RS01940 0.11 -4.5 359,712 - MMP_RS01940 0.16 -1.4 359,789 - MMP_RS01940 0.25 -2.9 360,037 + MMP_RS01940 0.51 -0.5 360,099 + MMP_RS01940 0.57 -2.0 360,176 + MMP_RS01940 0.66 -0.3 360,180 + MMP_RS01940 0.66 +0.3 360,458 - +0.8 360,480 + -2.8 360,513 - +1.0 360,514 + -1.1 360,518 - -1.4 360,612 + MMP_RS01945 0.14 -1.4 360,649 + MMP_RS01945 0.18 +0.0 360,743 - MMP_RS01945 0.27 -2.1 360,884 - MMP_RS01945 0.41 -0.6 360,885 + MMP_RS01945 0.41 +1.4 360,901 - MMP_RS01945 0.43 -1.0 360,906 - MMP_RS01945 0.43 -1.9 360,907 + MMP_RS01945 0.43 -3.8 360,992 + MMP_RS01945 0.52 -1.2 360,995 - MMP_RS01945 0.52 -0.2 360,996 + MMP_RS01945 0.52 -1.9 361,013 - MMP_RS01945 0.54 -1.6 361,015 - MMP_RS01945 0.54 -0.3 361,045 - MMP_RS01945 0.57 +1.7 361,274 + MMP_RS01945 0.80 +0.3 361,282 - MMP_RS01945 0.81 -1.3 361,291 - MMP_RS01945 0.82 +3.8 361,292 + MMP_RS01945 0.82 +1.0 361,294 + MMP_RS01945 0.82 +1.1 361,294 + MMP_RS01945 0.82 -1.6
Or see this region's nucleotide sequence