Strain Fitness in Methanococcus maripaludis S2 around MMP_RS01910

Experiment: McCas_H2_complete Antimycin A 0.01 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMMP_RS01905 and MMP_RS01910 are separated by 6 nucleotidesMMP_RS01910 and MMP_RS01915 are separated by 1 nucleotides MMP_RS01905: MMP_RS01905 - glycosyltransferase, at 352,524 to 353,708 _RS01905 MMP_RS01910: MMP_RS01910 - UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing), at 353,715 to 354,788 _RS01910 MMP_RS01915: MMP_RS01915 - DUF354 domain-containing protein, at 354,790 to 355,911 _RS01915 Position (kb) 353 354 355Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1at 352.769 kb on - strand, within MMP_RS01905at 352.871 kb on - strand, within MMP_RS01905at 352.944 kb on - strand, within MMP_RS01905at 352.948 kb on - strand, within MMP_RS01905at 352.949 kb on + strand, within MMP_RS01905at 353.022 kb on - strand, within MMP_RS01905at 353.023 kb on + strand, within MMP_RS01905at 353.029 kb on - strand, within MMP_RS01905at 353.030 kb on + strand, within MMP_RS01905at 353.043 kb on - strand, within MMP_RS01905at 353.058 kb on + strand, within MMP_RS01905at 353.085 kb on - strand, within MMP_RS01905at 353.090 kb on - strand, within MMP_RS01905at 353.094 kb on - strand, within MMP_RS01905at 353.095 kb on + strand, within MMP_RS01905at 353.095 kb on + strand, within MMP_RS01905at 353.097 kb on + strand, within MMP_RS01905at 353.118 kb on - strand, within MMP_RS01905at 353.119 kb on + strand, within MMP_RS01905at 353.128 kb on - strand, within MMP_RS01905at 353.128 kb on - strand, within MMP_RS01905at 353.141 kb on - strand, within MMP_RS01905at 353.142 kb on + strand, within MMP_RS01905at 353.144 kb on - strand, within MMP_RS01905at 353.144 kb on - strand, within MMP_RS01905at 353.144 kb on - strand, within MMP_RS01905at 353.145 kb on + strand, within MMP_RS01905at 353.150 kb on - strand, within MMP_RS01905at 353.159 kb on - strand, within MMP_RS01905at 353.160 kb on + strand, within MMP_RS01905at 353.161 kb on - strand, within MMP_RS01905at 353.189 kb on - strand, within MMP_RS01905at 353.199 kb on + strand, within MMP_RS01905at 353.202 kb on - strand, within MMP_RS01905at 353.203 kb on + strand, within MMP_RS01905at 353.203 kb on + strand, within MMP_RS01905at 353.204 kb on - strand, within MMP_RS01905at 353.204 kb on - strand, within MMP_RS01905at 353.225 kb on - strand, within MMP_RS01905at 353.225 kb on - strand, within MMP_RS01905at 353.225 kb on - strand, within MMP_RS01905at 353.225 kb on - strand, within MMP_RS01905at 353.226 kb on + strand, within MMP_RS01905at 353.226 kb on + strand, within MMP_RS01905at 353.226 kb on + strand, within MMP_RS01905at 353.226 kb on + strand, within MMP_RS01905at 353.226 kb on + strand, within MMP_RS01905at 353.255 kb on + strand, within MMP_RS01905at 353.255 kb on + strand, within MMP_RS01905at 353.265 kb on + strand, within MMP_RS01905at 353.265 kb on + strand, within MMP_RS01905at 353.286 kb on - strand, within MMP_RS01905at 353.286 kb on - strand, within MMP_RS01905at 353.293 kb on + strand, within MMP_RS01905at 353.296 kb on + strand, within MMP_RS01905at 353.296 kb on + strand, within MMP_RS01905at 353.312 kb on + strand, within MMP_RS01905at 353.339 kb on + strand, within MMP_RS01905at 353.354 kb on - strand, within MMP_RS01905at 353.355 kb on + strand, within MMP_RS01905at 353.399 kb on - strand, within MMP_RS01905at 353.401 kb on - strand, within MMP_RS01905at 353.405 kb on - strand, within MMP_RS01905at 353.405 kb on - strand, within MMP_RS01905at 353.421 kb on - strand, within MMP_RS01905at 353.422 kb on + strand, within MMP_RS01905at 353.422 kb on + strand, within MMP_RS01905at 353.464 kb on - strand, within MMP_RS01905at 353.464 kb on - strand, within MMP_RS01905at 353.465 kb on + strand, within MMP_RS01905at 353.490 kb on - strand, within MMP_RS01905at 353.490 kb on - strand, within MMP_RS01905at 353.491 kb on + strand, within MMP_RS01905at 353.504 kb on - strand, within MMP_RS01905at 353.505 kb on + strand, within MMP_RS01905at 353.510 kb on - strand, within MMP_RS01905at 353.511 kb on + strand, within MMP_RS01905at 353.573 kb on + strand, within MMP_RS01905at 353.599 kb on - strandat 353.599 kb on - strandat 353.616 kb on - strandat 353.616 kb on - strandat 353.617 kb on + strandat 353.619 kb on + strandat 353.682 kb on - strandat 353.684 kb on - strandat 353.689 kb on + strandat 353.708 kb on - strandat 353.709 kb on + strandat 353.711 kb on - strandat 353.711 kb on - strandat 353.711 kb on - strandat 353.711 kb on - strandat 353.779 kb on - strandat 353.779 kb on - strandat 353.780 kb on + strandat 353.831 kb on - strand, within MMP_RS01910at 353.847 kb on - strand, within MMP_RS01910at 353.848 kb on + strand, within MMP_RS01910at 353.849 kb on - strand, within MMP_RS01910at 353.850 kb on + strand, within MMP_RS01910at 353.850 kb on + strand, within MMP_RS01910at 353.888 kb on - strand, within MMP_RS01910at 353.972 kb on - strand, within MMP_RS01910at 353.984 kb on + strand, within MMP_RS01910at 353.994 kb on - strand, within MMP_RS01910at 354.021 kb on - strand, within MMP_RS01910at 354.027 kb on + strand, within MMP_RS01910at 354.031 kb on - strand, within MMP_RS01910at 354.059 kb on + strand, within MMP_RS01910at 354.066 kb on - strand, within MMP_RS01910at 354.123 kb on + strand, within MMP_RS01910at 354.132 kb on - strand, within MMP_RS01910at 354.135 kb on - strand, within MMP_RS01910at 354.144 kb on - strand, within MMP_RS01910at 354.155 kb on - strand, within MMP_RS01910at 354.190 kb on + strand, within MMP_RS01910at 354.194 kb on - strand, within MMP_RS01910at 354.196 kb on - strand, within MMP_RS01910at 354.197 kb on + strand, within MMP_RS01910at 354.216 kb on - strand, within MMP_RS01910at 354.234 kb on + strand, within MMP_RS01910at 354.281 kb on + strand, within MMP_RS01910at 354.281 kb on + strand, within MMP_RS01910at 354.285 kb on - strand, within MMP_RS01910at 354.285 kb on - strand, within MMP_RS01910at 354.285 kb on - strand, within MMP_RS01910at 354.285 kb on - strand, within MMP_RS01910at 354.286 kb on + strand, within MMP_RS01910at 354.286 kb on + strand, within MMP_RS01910at 354.299 kb on - strand, within MMP_RS01910at 354.335 kb on - strand, within MMP_RS01910at 354.525 kb on - strand, within MMP_RS01910at 354.609 kb on + strand, within MMP_RS01910at 354.676 kb on - strand, within MMP_RS01910at 354.778 kb on + strandat 354.780 kb on - strandat 354.780 kb on - strandat 354.804 kb on - strandat 354.809 kb on + strandat 354.889 kb on - strandat 354.926 kb on + strand, within MMP_RS01915at 354.928 kb on - strand, within MMP_RS01915at 354.928 kb on - strand, within MMP_RS01915at 354.973 kb on - strand, within MMP_RS01915at 355.024 kb on - strand, within MMP_RS01915at 355.024 kb on - strand, within MMP_RS01915at 355.051 kb on - strand, within MMP_RS01915at 355.065 kb on - strand, within MMP_RS01915at 355.091 kb on - strand, within MMP_RS01915at 355.092 kb on + strand, within MMP_RS01915at 355.092 kb on + strand, within MMP_RS01915at 355.092 kb on + strand, within MMP_RS01915at 355.096 kb on - strand, within MMP_RS01915at 355.096 kb on - strand, within MMP_RS01915at 355.111 kb on - strand, within MMP_RS01915at 355.112 kb on + strand, within MMP_RS01915at 355.112 kb on + strand, within MMP_RS01915at 355.167 kb on + strand, within MMP_RS01915at 355.169 kb on - strand, within MMP_RS01915at 355.169 kb on - strand, within MMP_RS01915at 355.169 kb on - strand, within MMP_RS01915at 355.169 kb on - strand, within MMP_RS01915at 355.169 kb on - strand, within MMP_RS01915at 355.170 kb on + strand, within MMP_RS01915at 355.170 kb on + strand, within MMP_RS01915at 355.171 kb on - strand, within MMP_RS01915at 355.171 kb on - strand, within MMP_RS01915at 355.171 kb on - strand, within MMP_RS01915at 355.171 kb on - strand, within MMP_RS01915at 355.172 kb on + strand, within MMP_RS01915at 355.174 kb on - strand, within MMP_RS01915at 355.175 kb on + strand, within MMP_RS01915at 355.175 kb on + strand, within MMP_RS01915at 355.252 kb on + strand, within MMP_RS01915at 355.390 kb on - strand, within MMP_RS01915at 355.390 kb on - strand, within MMP_RS01915at 355.393 kb on - strand, within MMP_RS01915at 355.421 kb on - strand, within MMP_RS01915at 355.422 kb on + strand, within MMP_RS01915at 355.422 kb on + strand, within MMP_RS01915at 355.422 kb on + strand, within MMP_RS01915at 355.425 kb on + strand, within MMP_RS01915at 355.435 kb on - strand, within MMP_RS01915at 355.436 kb on + strand, within MMP_RS01915at 355.440 kb on + strand, within MMP_RS01915at 355.455 kb on + strand, within MMP_RS01915at 355.635 kb on + strand, within MMP_RS01915at 355.654 kb on - strand, within MMP_RS01915at 355.656 kb on - strand, within MMP_RS01915at 355.697 kb on + strand, within MMP_RS01915at 355.708 kb on - strand, within MMP_RS01915at 355.708 kb on - strand, within MMP_RS01915at 355.709 kb on + strand, within MMP_RS01915at 355.751 kb on - strand, within MMP_RS01915at 355.751 kb on - strand, within MMP_RS01915at 355.752 kb on + strand, within MMP_RS01915at 355.753 kb on - strand, within MMP_RS01915at 355.753 kb on - strand, within MMP_RS01915at 355.753 kb on - strand, within MMP_RS01915at 355.754 kb on + strand, within MMP_RS01915at 355.754 kb on + strand, within MMP_RS01915at 355.765 kb on - strand, within MMP_RS01915at 355.772 kb on + strand, within MMP_RS01915at 355.772 kb on + strand, within MMP_RS01915

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction McCas_H2_complete Antimycin A 0.01 mM
remove
352,769 - MMP_RS01905 0.21 -1.7
352,871 - MMP_RS01905 0.29 -1.7
352,944 - MMP_RS01905 0.35 -4.7
352,948 - MMP_RS01905 0.36 -0.8
352,949 + MMP_RS01905 0.36 -5.2
353,022 - MMP_RS01905 0.42 -5.2
353,023 + MMP_RS01905 0.42 -5.9
353,029 - MMP_RS01905 0.43 +0.1
353,030 + MMP_RS01905 0.43 -6.1
353,043 - MMP_RS01905 0.44 -2.3
353,058 + MMP_RS01905 0.45 -3.8
353,085 - MMP_RS01905 0.47 -2.6
353,090 - MMP_RS01905 0.48 -0.0
353,094 - MMP_RS01905 0.48 -4.4
353,095 + MMP_RS01905 0.48 -3.8
353,095 + MMP_RS01905 0.48 -4.6
353,097 + MMP_RS01905 0.48 -4.3
353,118 - MMP_RS01905 0.50 -1.7
353,119 + MMP_RS01905 0.50 -4.9
353,128 - MMP_RS01905 0.51 -3.3
353,128 - MMP_RS01905 0.51 -2.3
353,141 - MMP_RS01905 0.52 -3.2
353,142 + MMP_RS01905 0.52 -5.2
353,144 - MMP_RS01905 0.52 -2.2
353,144 - MMP_RS01905 0.52 -4.6
353,144 - MMP_RS01905 0.52 -1.0
353,145 + MMP_RS01905 0.52 -0.4
353,150 - MMP_RS01905 0.53 -4.9
353,159 - MMP_RS01905 0.54 -3.9
353,160 + MMP_RS01905 0.54 -3.0
353,161 - MMP_RS01905 0.54 -4.9
353,189 - MMP_RS01905 0.56 -4.8
353,199 + MMP_RS01905 0.57 -1.6
353,202 - MMP_RS01905 0.57 -5.9
353,203 + MMP_RS01905 0.57 -5.5
353,203 + MMP_RS01905 0.57 -2.6
353,204 - MMP_RS01905 0.57 -5.5
353,204 - MMP_RS01905 0.57 -4.6
353,225 - MMP_RS01905 0.59 -6.6
353,225 - MMP_RS01905 0.59 -4.8
353,225 - MMP_RS01905 0.59 -2.0
353,225 - MMP_RS01905 0.59 -2.1
353,226 + MMP_RS01905 0.59 -2.2
353,226 + MMP_RS01905 0.59 +0.9
353,226 + MMP_RS01905 0.59 -1.3
353,226 + MMP_RS01905 0.59 -0.8
353,226 + MMP_RS01905 0.59 -2.7
353,255 + MMP_RS01905 0.62 +0.6
353,255 + MMP_RS01905 0.62 -1.3
353,265 + MMP_RS01905 0.63 -6.1
353,265 + MMP_RS01905 0.63 -3.3
353,286 - MMP_RS01905 0.64 -5.5
353,286 - MMP_RS01905 0.64 -3.9
353,293 + MMP_RS01905 0.65 -5.9
353,296 + MMP_RS01905 0.65 -5.8
353,296 + MMP_RS01905 0.65 -0.6
353,312 + MMP_RS01905 0.66 -4.2
353,339 + MMP_RS01905 0.69 -0.9
353,354 - MMP_RS01905 0.70 -1.5
353,355 + MMP_RS01905 0.70 -4.3
353,399 - MMP_RS01905 0.74 -1.0
353,401 - MMP_RS01905 0.74 -5.1
353,405 - MMP_RS01905 0.74 -2.8
353,405 - MMP_RS01905 0.74 -2.4
353,421 - MMP_RS01905 0.76 -2.6
353,422 + MMP_RS01905 0.76 -2.9
353,422 + MMP_RS01905 0.76 -1.8
353,464 - MMP_RS01905 0.79 -5.0
353,464 - MMP_RS01905 0.79 -2.0
353,465 + MMP_RS01905 0.79 -0.1
353,490 - MMP_RS01905 0.82 -2.0
353,490 - MMP_RS01905 0.82 -1.2
353,491 + MMP_RS01905 0.82 -3.4
353,504 - MMP_RS01905 0.83 -1.3
353,505 + MMP_RS01905 0.83 -3.5
353,510 - MMP_RS01905 0.83 -2.0
353,511 + MMP_RS01905 0.83 -2.0
353,573 + MMP_RS01905 0.89 -3.5
353,599 - -1.4
353,599 - -2.9
353,616 - -4.8
353,616 - -2.7
353,617 + -4.0
353,619 + -1.7
353,682 - -2.5
353,684 - -1.9
353,689 + -1.6
353,708 - -4.8
353,709 + -3.7
353,711 - -2.9
353,711 - -3.9
353,711 - -4.7
353,711 - -1.6
353,779 - +0.2
353,779 - -2.0
353,780 + -3.0
353,831 - MMP_RS01910 0.11 -1.9
353,847 - MMP_RS01910 0.12 -4.6
353,848 + MMP_RS01910 0.12 -2.9
353,849 - MMP_RS01910 0.12 -2.0
353,850 + MMP_RS01910 0.13 +0.2
353,850 + MMP_RS01910 0.13 -2.0
353,888 - MMP_RS01910 0.16 -4.2
353,972 - MMP_RS01910 0.24 -4.1
353,984 + MMP_RS01910 0.25 -1.6
353,994 - MMP_RS01910 0.26 +0.5
354,021 - MMP_RS01910 0.28 -2.5
354,027 + MMP_RS01910 0.29 -4.7
354,031 - MMP_RS01910 0.29 -3.8
354,059 + MMP_RS01910 0.32 -4.2
354,066 - MMP_RS01910 0.33 -4.9
354,123 + MMP_RS01910 0.38 -2.0
354,132 - MMP_RS01910 0.39 -3.8
354,135 - MMP_RS01910 0.39 -2.4
354,144 - MMP_RS01910 0.40 -0.6
354,155 - MMP_RS01910 0.41 -0.7
354,190 + MMP_RS01910 0.44 -0.9
354,194 - MMP_RS01910 0.45 -3.8
354,196 - MMP_RS01910 0.45 -2.1
354,197 + MMP_RS01910 0.45 -0.5
354,216 - MMP_RS01910 0.47 -2.1
354,234 + MMP_RS01910 0.48 -1.3
354,281 + MMP_RS01910 0.53 -1.0
354,281 + MMP_RS01910 0.53 -1.0
354,285 - MMP_RS01910 0.53 -5.0
354,285 - MMP_RS01910 0.53 -0.1
354,285 - MMP_RS01910 0.53 -2.0
354,285 - MMP_RS01910 0.53 -2.0
354,286 + MMP_RS01910 0.53 -3.9
354,286 + MMP_RS01910 0.53 -2.2
354,299 - MMP_RS01910 0.54 -1.1
354,335 - MMP_RS01910 0.58 -2.9
354,525 - MMP_RS01910 0.75 -1.2
354,609 + MMP_RS01910 0.83 -5.1
354,676 - MMP_RS01910 0.89 -2.4
354,778 + -3.6
354,780 - -1.2
354,780 - +1.3
354,804 - -1.7
354,809 + -0.9
354,889 - -0.2
354,926 + MMP_RS01915 0.12 -1.1
354,928 - MMP_RS01915 0.12 -3.8
354,928 - MMP_RS01915 0.12 -0.9
354,973 - MMP_RS01915 0.16 -2.6
355,024 - MMP_RS01915 0.21 -4.7
355,024 - MMP_RS01915 0.21 -4.6
355,051 - MMP_RS01915 0.23 -4.8
355,065 - MMP_RS01915 0.25 -1.5
355,091 - MMP_RS01915 0.27 -1.0
355,092 + MMP_RS01915 0.27 -2.7
355,092 + MMP_RS01915 0.27 -0.3
355,092 + MMP_RS01915 0.27 -1.1
355,096 - MMP_RS01915 0.27 -4.9
355,096 - MMP_RS01915 0.27 -3.0
355,111 - MMP_RS01915 0.29 -1.9
355,112 + MMP_RS01915 0.29 -3.0
355,112 + MMP_RS01915 0.29 -4.9
355,167 + MMP_RS01915 0.34 -4.3
355,169 - MMP_RS01915 0.34 -1.7
355,169 - MMP_RS01915 0.34 -5.6
355,169 - MMP_RS01915 0.34 -3.5
355,169 - MMP_RS01915 0.34 -4.8
355,169 - MMP_RS01915 0.34 -1.2
355,170 + MMP_RS01915 0.34 -3.5
355,170 + MMP_RS01915 0.34 -3.0
355,171 - MMP_RS01915 0.34 +0.5
355,171 - MMP_RS01915 0.34 -2.7
355,171 - MMP_RS01915 0.34 -0.8
355,171 - MMP_RS01915 0.34 -1.9
355,172 + MMP_RS01915 0.34 -4.1
355,174 - MMP_RS01915 0.34 -1.4
355,175 + MMP_RS01915 0.34 -3.7
355,175 + MMP_RS01915 0.34 -3.3
355,252 + MMP_RS01915 0.41 -5.6
355,390 - MMP_RS01915 0.53 -2.0
355,390 - MMP_RS01915 0.53 -3.7
355,393 - MMP_RS01915 0.54 -3.1
355,421 - MMP_RS01915 0.56 -0.9
355,422 + MMP_RS01915 0.56 -1.9
355,422 + MMP_RS01915 0.56 +0.2
355,422 + MMP_RS01915 0.56 -0.5
355,425 + MMP_RS01915 0.57 -1.7
355,435 - MMP_RS01915 0.57 -3.9
355,436 + MMP_RS01915 0.58 -3.6
355,440 + MMP_RS01915 0.58 -5.6
355,455 + MMP_RS01915 0.59 -4.3
355,635 + MMP_RS01915 0.75 -1.9
355,654 - MMP_RS01915 0.77 -1.6
355,656 - MMP_RS01915 0.77 -5.6
355,697 + MMP_RS01915 0.81 -1.0
355,708 - MMP_RS01915 0.82 -0.5
355,708 - MMP_RS01915 0.82 -0.9
355,709 + MMP_RS01915 0.82 -2.3
355,751 - MMP_RS01915 0.86 -0.8
355,751 - MMP_RS01915 0.86 -5.4
355,752 + MMP_RS01915 0.86 -4.7
355,753 - MMP_RS01915 0.86 -1.0
355,753 - MMP_RS01915 0.86 -4.9
355,753 - MMP_RS01915 0.86 -1.4
355,754 + MMP_RS01915 0.86 -0.3
355,754 + MMP_RS01915 0.86 -4.9
355,765 - MMP_RS01915 0.87 -1.8
355,772 + MMP_RS01915 0.88 -1.4
355,772 + MMP_RS01915 0.88 -1.4

Or see this region's nucleotide sequence