Experiment: McCas_H2_complete Antimycin A 0.01 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS01845 and MMP_RS01850 are separated by 124 nucleotides MMP_RS01850 and MMP_RS01855 are separated by 42 nucleotides MMP_RS01855 and MMP_RS01860 are separated by 225 nucleotides MMP_RS01860 and MMP_RS01865 are separated by 90 nucleotides
MMP_RS01845: MMP_RS01845 - hypothetical protein, at 340,591 to 341,472
_RS01845
MMP_RS01850: MMP_RS01850 - phosphate ABC transporter substrate-binding protein, at 341,597 to 342,424
_RS01850
MMP_RS01855: MMP_RS01855 - 2-hydroxyacyl-CoA dehydratase family protein, at 342,467 to 343,588
_RS01855
MMP_RS01860: MMP_RS01860 - hypothetical protein, at 343,814 to 344,128
_RS01860
MMP_RS01865: MMP_RS01865 - GPR1/FUN34/YaaH family transporter, at 344,219 to 344,812
_RS01865
Position (kb) 342
343
344 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3 at 341.472 kb on - strand at 341.472 kb on - strand at 341.475 kb on - strand at 341.475 kb on - strand at 341.476 kb on + strand at 341.476 kb on + strand at 341.476 kb on + strand at 341.476 kb on + strand at 341.501 kb on - strand at 341.501 kb on - strand at 341.603 kb on - strand at 341.658 kb on - strand at 341.780 kb on - strand, within MMP_RS01850 at 341.780 kb on - strand, within MMP_RS01850 at 341.781 kb on + strand, within MMP_RS01850 at 341.806 kb on + strand, within MMP_RS01850 at 341.806 kb on + strand, within MMP_RS01850 at 341.910 kb on + strand, within MMP_RS01850 at 341.942 kb on + strand, within MMP_RS01850 at 341.972 kb on - strand, within MMP_RS01850 at 342.047 kb on + strand, within MMP_RS01850 at 342.247 kb on - strand, within MMP_RS01850 at 342.265 kb on + strand, within MMP_RS01850 at 342.393 kb on + strand at 342.627 kb on - strand, within MMP_RS01855 at 342.628 kb on + strand, within MMP_RS01855 at 342.631 kb on + strand, within MMP_RS01855 at 342.632 kb on - strand, within MMP_RS01855 at 342.727 kb on + strand, within MMP_RS01855 at 342.823 kb on - strand, within MMP_RS01855 at 342.832 kb on - strand, within MMP_RS01855 at 342.833 kb on + strand, within MMP_RS01855 at 342.971 kb on - strand, within MMP_RS01855 at 342.972 kb on + strand, within MMP_RS01855 at 343.318 kb on + strand, within MMP_RS01855 at 343.403 kb on - strand, within MMP_RS01855 at 343.488 kb on + strand at 343.527 kb on + strand at 343.646 kb on - strand at 343.657 kb on - strand at 343.657 kb on - strand at 343.657 kb on - strand at 343.658 kb on + strand at 343.666 kb on - strand at 343.666 kb on - strand at 343.666 kb on - strand at 343.666 kb on - strand at 343.666 kb on - strand at 343.666 kb on - strand at 343.666 kb on - strand at 343.666 kb on - strand at 343.667 kb on + strand at 343.667 kb on + strand at 343.667 kb on + strand at 343.667 kb on + strand at 343.667 kb on + strand at 343.667 kb on + strand at 343.667 kb on + strand at 343.667 kb on + strand at 343.669 kb on + strand at 343.669 kb on + strand at 343.676 kb on - strand at 343.676 kb on - strand at 343.676 kb on - strand at 343.676 kb on - strand at 343.676 kb on - strand at 343.676 kb on - strand at 343.677 kb on + strand at 343.688 kb on + strand at 343.849 kb on + strand, within MMP_RS01860 at 343.849 kb on + strand, within MMP_RS01860 at 343.849 kb on + strand, within MMP_RS01860 at 343.849 kb on + strand, within MMP_RS01860 at 343.879 kb on - strand, within MMP_RS01860 at 343.879 kb on - strand, within MMP_RS01860 at 343.896 kb on + strand, within MMP_RS01860 at 343.911 kb on + strand, within MMP_RS01860 at 343.992 kb on + strand, within MMP_RS01860 at 344.004 kb on - strand, within MMP_RS01860 at 344.023 kb on - strand, within MMP_RS01860 at 344.096 kb on - strand, within MMP_RS01860 at 344.099 kb on + strand at 344.103 kb on + strand at 344.115 kb on + strand at 344.128 kb on - strand at 344.182 kb on - strand at 344.182 kb on - strand at 344.182 kb on - strand at 344.183 kb on + strand at 344.184 kb on - strand at 344.184 kb on - strand at 344.185 kb on + strand at 344.186 kb on - strand at 344.187 kb on + strand at 344.187 kb on + strand at 344.388 kb on + strand, within MMP_RS01865
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_H2_complete Antimycin A 0.01 mM remove 341,472 - -1.6 341,472 - +0.4 341,475 - +0.7 341,475 - -0.9 341,476 + -1.4 341,476 + +0.9 341,476 + -0.9 341,476 + -1.6 341,501 - +0.7 341,501 - +2.6 341,603 - +2.3 341,658 - -1.0 341,780 - MMP_RS01850 0.22 +0.8 341,780 - MMP_RS01850 0.22 +0.3 341,781 + MMP_RS01850 0.22 -1.3 341,806 + MMP_RS01850 0.25 +0.7 341,806 + MMP_RS01850 0.25 +0.4 341,910 + MMP_RS01850 0.38 +1.5 341,942 + MMP_RS01850 0.42 +0.7 341,972 - MMP_RS01850 0.45 +1.2 342,047 + MMP_RS01850 0.54 -1.0 342,247 - MMP_RS01850 0.79 -0.7 342,265 + MMP_RS01850 0.81 +1.1 342,393 + -0.3 342,627 - MMP_RS01855 0.14 +0.3 342,628 + MMP_RS01855 0.14 +1.6 342,631 + MMP_RS01855 0.15 +2.4 342,632 - MMP_RS01855 0.15 +0.7 342,727 + MMP_RS01855 0.23 +2.4 342,823 - MMP_RS01855 0.32 +2.8 342,832 - MMP_RS01855 0.33 -0.5 342,833 + MMP_RS01855 0.33 +0.1 342,971 - MMP_RS01855 0.45 +1.0 342,972 + MMP_RS01855 0.45 -0.1 343,318 + MMP_RS01855 0.76 +1.1 343,403 - MMP_RS01855 0.83 +1.0 343,488 + +1.2 343,527 + +1.0 343,646 - +0.6 343,657 - -2.6 343,657 - +2.9 343,657 - -1.3 343,658 + +3.0 343,666 - +0.6 343,666 - +0.8 343,666 - +0.0 343,666 - +1.3 343,666 - -0.5 343,666 - +1.5 343,666 - +0.9 343,666 - +0.6 343,667 + +1.4 343,667 + +1.4 343,667 + -1.4 343,667 + +1.0 343,667 + +0.8 343,667 + +0.6 343,667 + +0.0 343,667 + +1.5 343,669 + +1.2 343,669 + -0.9 343,676 - -2.1 343,676 - -1.7 343,676 - +0.2 343,676 - -0.2 343,676 - +0.3 343,676 - -0.6 343,677 + +0.0 343,688 + -0.8 343,849 + MMP_RS01860 0.11 +0.4 343,849 + MMP_RS01860 0.11 -5.5 343,849 + MMP_RS01860 0.11 +0.0 343,849 + MMP_RS01860 0.11 +0.5 343,879 - MMP_RS01860 0.21 +0.8 343,879 - MMP_RS01860 0.21 -2.9 343,896 + MMP_RS01860 0.26 +0.3 343,911 + MMP_RS01860 0.31 +0.2 343,992 + MMP_RS01860 0.57 +0.9 344,004 - MMP_RS01860 0.60 +0.1 344,023 - MMP_RS01860 0.66 +1.3 344,096 - MMP_RS01860 0.90 +1.7 344,099 + +0.3 344,103 + +1.3 344,115 + +0.6 344,128 - +0.3 344,182 - +0.6 344,182 - +0.4 344,182 - -1.6 344,183 + +0.9 344,184 - -0.0 344,184 - -0.0 344,185 + +0.9 344,186 - -1.5 344,187 + +0.5 344,187 + +1.2 344,388 + MMP_RS01865 0.28 +0.6
Or see this region's nucleotide sequence