Experiment: McCas_H2_complete Antimycin A 0.01 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS01565 and MMP_RS01570 overlap by 4 nucleotides MMP_RS01570 and MMP_RS01575 are separated by 11 nucleotides MMP_RS01575 and MMP_RS01580 are separated by 158 nucleotides
MMP_RS01565: MMP_RS01565 - AIR synthase related protein, at 291,659 to 293,002
_RS01565
MMP_RS01570: MMP_RS01570 - hypothetical protein, at 292,999 to 293,184
_RS01570
MMP_RS01575: MMP_RS01575 - aldolase, at 293,196 to 294,122
_RS01575
MMP_RS01580: MMP_RS01580 - PQQ-binding-like beta-propeller repeat protein, at 294,281 to 295,129
_RS01580
Position (kb) 293
294
295 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3 at 292.597 kb on - strand at 292.620 kb on - strand at 293.157 kb on - strand, within MMP_RS01570 at 293.187 kb on - strand at 293.198 kb on + strand at 293.217 kb on - strand at 293.219 kb on - strand at 293.220 kb on + strand at 293.413 kb on + strand, within MMP_RS01575 at 293.420 kb on - strand, within MMP_RS01575 at 293.438 kb on - strand, within MMP_RS01575 at 293.487 kb on - strand, within MMP_RS01575 at 293.682 kb on - strand, within MMP_RS01575 at 293.682 kb on - strand, within MMP_RS01575 at 293.838 kb on + strand, within MMP_RS01575 at 294.029 kb on - strand, within MMP_RS01575 at 294.137 kb on - strand at 294.145 kb on + strand at 294.152 kb on - strand at 294.153 kb on + strand at 294.164 kb on - strand at 294.164 kb on - strand at 294.172 kb on - strand at 294.195 kb on + strand at 294.224 kb on + strand at 294.224 kb on + strand at 294.225 kb on - strand at 294.226 kb on + strand at 294.226 kb on + strand at 294.226 kb on + strand at 294.226 kb on + strand at 294.227 kb on - strand at 294.228 kb on + strand at 294.241 kb on + strand at 294.241 kb on + strand at 294.241 kb on + strand at 294.244 kb on - strand at 294.244 kb on - strand at 294.245 kb on + strand at 294.245 kb on + strand at 294.245 kb on + strand at 294.245 kb on + strand at 294.245 kb on + strand at 294.338 kb on + strand at 294.338 kb on + strand at 294.377 kb on + strand, within MMP_RS01580 at 294.377 kb on + strand, within MMP_RS01580 at 294.398 kb on + strand, within MMP_RS01580 at 294.398 kb on + strand, within MMP_RS01580 at 294.459 kb on - strand, within MMP_RS01580 at 294.470 kb on + strand, within MMP_RS01580 at 294.515 kb on + strand, within MMP_RS01580 at 294.637 kb on + strand, within MMP_RS01580 at 294.752 kb on - strand, within MMP_RS01580 at 294.753 kb on + strand, within MMP_RS01580 at 294.870 kb on - strand, within MMP_RS01580 at 294.966 kb on + strand, within MMP_RS01580 at 295.055 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_H2_complete Antimycin A 0.01 mM remove 292,597 - -5.0 292,620 - -3.1 293,157 - MMP_RS01570 0.85 +2.0 293,187 - +0.3 293,198 + +0.6 293,217 - -1.9 293,219 - -0.1 293,220 + +1.0 293,413 + MMP_RS01575 0.23 +1.0 293,420 - MMP_RS01575 0.24 -3.0 293,438 - MMP_RS01575 0.26 -2.3 293,487 - MMP_RS01575 0.31 -0.5 293,682 - MMP_RS01575 0.52 -0.5 293,682 - MMP_RS01575 0.52 -1.9 293,838 + MMP_RS01575 0.69 -0.6 294,029 - MMP_RS01575 0.90 -2.4 294,137 - -5.0 294,145 + -0.3 294,152 - +0.8 294,153 + -0.6 294,164 - +1.7 294,164 - +0.5 294,172 - +1.2 294,195 + +1.2 294,224 + +3.1 294,224 + +2.6 294,225 - +0.2 294,226 + +1.7 294,226 + +1.7 294,226 + +1.1 294,226 + +0.6 294,227 - +1.1 294,228 + -1.9 294,241 + +1.7 294,241 + +1.6 294,241 + +0.6 294,244 - +1.0 294,244 - +0.8 294,245 + +0.7 294,245 + -1.9 294,245 + +1.1 294,245 + +1.0 294,245 + +0.7 294,338 + +3.4 294,338 + +0.4 294,377 + MMP_RS01580 0.11 +0.9 294,377 + MMP_RS01580 0.11 -1.5 294,398 + MMP_RS01580 0.14 +2.0 294,398 + MMP_RS01580 0.14 +0.9 294,459 - MMP_RS01580 0.21 +0.5 294,470 + MMP_RS01580 0.22 -0.5 294,515 + MMP_RS01580 0.28 +1.3 294,637 + MMP_RS01580 0.42 +1.7 294,752 - MMP_RS01580 0.55 +0.7 294,753 + MMP_RS01580 0.56 +1.3 294,870 - MMP_RS01580 0.69 +1.0 294,966 + MMP_RS01580 0.81 +0.4 295,055 + +0.2
Or see this region's nucleotide sequence