Experiment: McCas_H2_complete Antimycin A 0.01 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS01450 and MMP_RS01455 are separated by 245 nucleotides MMP_RS01455 and MMP_RS01460 are separated by 23 nucleotides MMP_RS01460 and MMP_RS01465 are separated by 1 nucleotides
MMP_RS01450: MMP_RS01450 - tRNA pseudouridine(38-40) synthase TruA, at 267,810 to 268,598
_RS01450
MMP_RS01455: MMP_RS01455 - nickel pincer cofactor biosynthesis protein LarC, at 268,844 to 270,058
_RS01455
MMP_RS01460: MMP_RS01460 - hypothetical protein, at 270,082 to 270,741
_RS01460
MMP_RS01465: MMP_RS01465 - hypothetical protein, at 270,743 to 271,441
_RS01465
Position (kb) 268
269
270
271 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 267.904 kb on - strand, within MMP_RS01450 at 267.904 kb on - strand, within MMP_RS01450 at 267.904 kb on - strand, within MMP_RS01450 at 267.905 kb on + strand, within MMP_RS01450 at 267.905 kb on + strand, within MMP_RS01450 at 267.926 kb on - strand, within MMP_RS01450 at 267.930 kb on + strand, within MMP_RS01450 at 267.988 kb on - strand, within MMP_RS01450 at 268.037 kb on - strand, within MMP_RS01450 at 268.107 kb on - strand, within MMP_RS01450 at 268.279 kb on + strand, within MMP_RS01450 at 268.283 kb on - strand, within MMP_RS01450 at 268.283 kb on - strand, within MMP_RS01450 at 268.283 kb on - strand, within MMP_RS01450 at 268.283 kb on - strand, within MMP_RS01450 at 268.284 kb on + strand, within MMP_RS01450 at 268.284 kb on + strand, within MMP_RS01450 at 268.284 kb on + strand, within MMP_RS01450 at 268.413 kb on - strand, within MMP_RS01450 at 268.418 kb on + strand, within MMP_RS01450 at 268.434 kb on - strand, within MMP_RS01450 at 268.587 kb on + strand at 268.587 kb on + strand at 268.590 kb on - strand at 268.590 kb on - strand at 268.594 kb on - strand at 268.594 kb on - strand at 268.602 kb on + strand at 268.602 kb on + strand at 268.610 kb on - strand at 268.612 kb on - strand at 268.612 kb on - strand at 268.612 kb on - strand at 268.612 kb on - strand at 268.613 kb on + strand at 268.657 kb on - strand at 268.657 kb on - strand at 268.657 kb on - strand at 268.660 kb on + strand at 268.694 kb on - strand at 268.694 kb on - strand at 268.701 kb on + strand at 268.703 kb on - strand at 268.704 kb on + strand at 269.100 kb on - strand, within MMP_RS01455 at 269.110 kb on - strand, within MMP_RS01455 at 269.155 kb on - strand, within MMP_RS01455 at 269.157 kb on - strand, within MMP_RS01455 at 269.209 kb on + strand, within MMP_RS01455 at 269.283 kb on + strand, within MMP_RS01455 at 269.701 kb on + strand, within MMP_RS01455 at 269.824 kb on - strand, within MMP_RS01455 at 270.061 kb on + strand at 270.061 kb on + strand at 270.064 kb on - strand at 270.069 kb on - strand at 270.069 kb on - strand at 270.070 kb on + strand at 270.070 kb on + strand at 270.071 kb on - strand at 270.071 kb on - strand at 270.072 kb on + strand at 270.075 kb on + strand at 270.078 kb on - strand at 270.079 kb on + strand at 270.084 kb on + strand at 270.088 kb on - strand at 270.224 kb on - strand, within MMP_RS01460 at 270.224 kb on - strand, within MMP_RS01460 at 270.324 kb on + strand, within MMP_RS01460 at 270.756 kb on - strand at 271.001 kb on - strand, within MMP_RS01465 at 271.023 kb on + strand, within MMP_RS01465 at 271.037 kb on + strand, within MMP_RS01465
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_H2_complete Antimycin A 0.01 mM remove 267,904 - MMP_RS01450 0.12 +2.3 267,904 - MMP_RS01450 0.12 -0.8 267,904 - MMP_RS01450 0.12 +0.5 267,905 + MMP_RS01450 0.12 -3.1 267,905 + MMP_RS01450 0.12 -0.1 267,926 - MMP_RS01450 0.15 +0.6 267,930 + MMP_RS01450 0.15 -1.1 267,988 - MMP_RS01450 0.23 +1.3 268,037 - MMP_RS01450 0.29 +1.4 268,107 - MMP_RS01450 0.38 +1.7 268,279 + MMP_RS01450 0.59 +0.2 268,283 - MMP_RS01450 0.60 +1.6 268,283 - MMP_RS01450 0.60 -1.3 268,283 - MMP_RS01450 0.60 +0.6 268,283 - MMP_RS01450 0.60 -1.0 268,284 + MMP_RS01450 0.60 +1.1 268,284 + MMP_RS01450 0.60 -1.7 268,284 + MMP_RS01450 0.60 +4.4 268,413 - MMP_RS01450 0.76 +0.4 268,418 + MMP_RS01450 0.77 +0.7 268,434 - MMP_RS01450 0.79 -0.5 268,587 + +0.4 268,587 + -1.8 268,590 - +1.2 268,590 - +1.4 268,594 - +0.9 268,594 - +1.8 268,602 + -1.0 268,602 + +0.3 268,610 - +0.6 268,612 - -2.3 268,612 - +1.4 268,612 - -2.0 268,612 - -0.2 268,613 + -0.1 268,657 - +1.0 268,657 - +0.1 268,657 - -1.3 268,660 + +0.7 268,694 - +0.2 268,694 - +1.6 268,701 + +2.4 268,703 - +0.8 268,704 + +1.8 269,100 - MMP_RS01455 0.21 +0.6 269,110 - MMP_RS01455 0.22 -0.5 269,155 - MMP_RS01455 0.26 -0.3 269,157 - MMP_RS01455 0.26 +0.9 269,209 + MMP_RS01455 0.30 -0.3 269,283 + MMP_RS01455 0.36 +0.1 269,701 + MMP_RS01455 0.71 -0.3 269,824 - MMP_RS01455 0.81 +0.4 270,061 + +0.3 270,061 + +0.3 270,064 - -0.1 270,069 - +1.7 270,069 - +1.3 270,070 + +1.3 270,070 + -1.3 270,071 - +1.8 270,071 - +2.0 270,072 + +2.0 270,075 + +0.8 270,078 - -0.3 270,079 + +1.1 270,084 + -0.2 270,088 - +0.6 270,224 - MMP_RS01460 0.22 +1.9 270,224 - MMP_RS01460 0.22 -0.1 270,324 + MMP_RS01460 0.37 +0.9 270,756 - -0.1 271,001 - MMP_RS01465 0.37 +3.2 271,023 + MMP_RS01465 0.40 -0.7 271,037 + MMP_RS01465 0.42 +0.5
Or see this region's nucleotide sequence