Experiment: McCas_H2_complete Antimycin A 0.01 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS01180 and MMP_RS01185 are separated by 115 nucleotides MMP_RS01185 and MMP_RS01190 are separated by 22 nucleotides MMP_RS01190 and MMP_RS01195 are separated by 2 nucleotides MMP_RS01195 and MMP_RS01200 are separated by 120 nucleotides
MMP_RS01180: MMP_RS01180 - XTP/dITP diphosphatase, at 221,545 to 222,096
_RS01180
MMP_RS01185: MMP_RS01185 - hypothetical protein, at 222,212 to 222,622
_RS01185
MMP_RS01190: MMP_RS01190 - cadmium-translocating P-type ATPase, at 222,645 to 224,720
_RS01190
MMP_RS01195: MMP_RS01195 - metalloregulator ArsR/SmtB family transcription factor, at 224,723 to 225,067
_RS01195
MMP_RS01200: MMP_RS01200 - hypothetical protein, at 225,188 to 225,925
_RS01200
Position (kb) 222
223
224
225 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 221.759 kb on - strand, within MMP_RS01180 at 221.915 kb on + strand, within MMP_RS01180 at 222.063 kb on - strand at 222.086 kb on - strand at 222.097 kb on + strand at 222.134 kb on - strand at 222.135 kb on + strand at 222.142 kb on + strand at 222.158 kb on - strand at 222.158 kb on - strand at 222.158 kb on - strand at 222.159 kb on + strand at 222.171 kb on + strand at 222.186 kb on + strand at 222.188 kb on - strand at 222.444 kb on - strand, within MMP_RS01185 at 222.444 kb on - strand, within MMP_RS01185 at 222.447 kb on + strand, within MMP_RS01185 at 222.449 kb on + strand, within MMP_RS01185 at 222.475 kb on - strand, within MMP_RS01185 at 222.551 kb on - strand, within MMP_RS01185 at 222.551 kb on - strand, within MMP_RS01185 at 222.552 kb on + strand, within MMP_RS01185 at 222.552 kb on + strand, within MMP_RS01185 at 222.553 kb on - strand, within MMP_RS01185 at 222.576 kb on + strand, within MMP_RS01185 at 222.607 kb on + strand at 223.052 kb on + strand, within MMP_RS01190 at 223.196 kb on - strand, within MMP_RS01190 at 223.197 kb on + strand, within MMP_RS01190 at 223.586 kb on + strand, within MMP_RS01190 at 223.776 kb on - strand, within MMP_RS01190 at 223.776 kb on - strand, within MMP_RS01190 at 223.841 kb on - strand, within MMP_RS01190 at 224.265 kb on - strand, within MMP_RS01190 at 224.349 kb on + strand, within MMP_RS01190 at 224.367 kb on - strand, within MMP_RS01190 at 224.370 kb on - strand, within MMP_RS01190 at 224.374 kb on - strand, within MMP_RS01190 at 224.485 kb on - strand, within MMP_RS01190 at 224.529 kb on - strand at 224.599 kb on + strand at 224.725 kb on + strand at 224.966 kb on + strand, within MMP_RS01195 at 225.125 kb on + strand at 225.187 kb on - strand at 225.187 kb on - strand at 225.188 kb on + strand at 225.412 kb on + strand, within MMP_RS01200 at 225.412 kb on + strand, within MMP_RS01200 at 225.572 kb on + strand, within MMP_RS01200 at 225.596 kb on + strand, within MMP_RS01200 at 225.693 kb on - strand, within MMP_RS01200
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_H2_complete Antimycin A 0.01 mM remove 221,759 - MMP_RS01180 0.39 -1.0 221,915 + MMP_RS01180 0.67 -1.0 222,063 - +0.5 222,086 - -0.9 222,097 + +1.4 222,134 - +0.4 222,135 + -3.8 222,142 + +0.2 222,158 - +1.1 222,158 - +2.6 222,158 - +2.9 222,159 + -2.2 222,171 + +0.1 222,186 + -0.7 222,188 - +1.3 222,444 - MMP_RS01185 0.56 +1.3 222,444 - MMP_RS01185 0.56 -0.9 222,447 + MMP_RS01185 0.57 -0.3 222,449 + MMP_RS01185 0.58 +0.2 222,475 - MMP_RS01185 0.64 +0.5 222,551 - MMP_RS01185 0.82 -0.9 222,551 - MMP_RS01185 0.82 +1.8 222,552 + MMP_RS01185 0.83 -1.5 222,552 + MMP_RS01185 0.83 +1.0 222,553 - MMP_RS01185 0.83 +1.0 222,576 + MMP_RS01185 0.89 +0.5 222,607 + +0.2 223,052 + MMP_RS01190 0.20 -0.1 223,196 - MMP_RS01190 0.27 -0.8 223,197 + MMP_RS01190 0.27 +1.1 223,586 + MMP_RS01190 0.45 +1.3 223,776 - MMP_RS01190 0.54 +1.2 223,776 - MMP_RS01190 0.54 +1.2 223,841 - MMP_RS01190 0.58 -0.3 224,265 - MMP_RS01190 0.78 -1.4 224,349 + MMP_RS01190 0.82 -2.4 224,367 - MMP_RS01190 0.83 -0.2 224,370 - MMP_RS01190 0.83 +2.3 224,374 - MMP_RS01190 0.83 -0.8 224,485 - MMP_RS01190 0.89 +1.4 224,529 - -1.2 224,599 + -0.5 224,725 + +1.9 224,966 + MMP_RS01195 0.70 -1.7 225,125 + +0.7 225,187 - +0.6 225,187 - +1.2 225,188 + -0.7 225,412 + MMP_RS01200 0.30 +0.9 225,412 + MMP_RS01200 0.30 +1.0 225,572 + MMP_RS01200 0.52 +0.4 225,596 + MMP_RS01200 0.55 +0.0 225,693 - MMP_RS01200 0.68 +2.6
Or see this region's nucleotide sequence