Experiment: McCas_H2_complete Antimycin A 0.01 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS00875 and MMP_RS00880 are separated by 236 nucleotides MMP_RS00880 and MMP_RS00885 are separated by 229 nucleotides MMP_RS00885 and MMP_RS00890 are separated by 25 nucleotides
MMP_RS00875: MMP_RS00875 - methanogenesis marker 3 protein, at 165,135 to 166,640
_RS00875
MMP_RS00880: MMP_RS00880 - ribosome assembly RNA-binding protein YhbY, at 166,877 to 167,260
_RS00880
MMP_RS00885: MMP_RS00885 - 30S ribosomal protein S19e, at 167,490 to 167,915
_RS00885
MMP_RS00890: MMP_RS00890 - DNA-binding protein, at 167,941 to 168,300
_RS00890
Position (kb) 166
167
168 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3
4 at 166.334 kb on - strand at 166.371 kb on - strand at 166.570 kb on - strand at 166.585 kb on + strand at 166.664 kb on + strand at 166.667 kb on - strand at 166.668 kb on + strand at 166.703 kb on - strand at 166.704 kb on + strand at 166.704 kb on + strand at 166.705 kb on - strand at 166.710 kb on + strand at 166.712 kb on + strand at 166.725 kb on - strand at 166.725 kb on - strand at 166.726 kb on + strand at 166.728 kb on - strand at 166.728 kb on - strand at 166.729 kb on + strand at 166.737 kb on + strand at 166.743 kb on + strand at 166.747 kb on - strand at 166.749 kb on - strand at 166.749 kb on - strand at 166.749 kb on - strand at 166.749 kb on - strand at 166.749 kb on - strand at 166.750 kb on + strand at 166.751 kb on - strand at 166.752 kb on + strand at 166.752 kb on + strand at 166.752 kb on + strand at 166.752 kb on + strand at 166.753 kb on - strand at 166.753 kb on - strand at 166.753 kb on - strand at 166.754 kb on + strand at 166.754 kb on + strand at 166.758 kb on - strand at 166.759 kb on + strand at 166.819 kb on + strand at 166.850 kb on - strand at 166.856 kb on - strand at 166.856 kb on - strand at 166.856 kb on - strand at 166.857 kb on + strand at 166.857 kb on + strand at 166.857 kb on + strand at 166.857 kb on + strand at 166.897 kb on + strand at 166.923 kb on - strand, within MMP_RS00880 at 166.956 kb on - strand, within MMP_RS00880 at 167.029 kb on - strand, within MMP_RS00880 at 167.032 kb on + strand, within MMP_RS00880 at 167.207 kb on - strand, within MMP_RS00880 at 167.262 kb on + strand at 167.906 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_H2_complete Antimycin A 0.01 mM remove 166,334 - +0.3 166,371 - -1.2 166,570 - -0.8 166,585 + -1.1 166,664 + -3.8 166,667 - -0.1 166,668 + -4.0 166,703 - -0.5 166,704 + -1.8 166,704 + -5.5 166,705 - -0.2 166,710 + -0.4 166,712 + -0.3 166,725 - -0.8 166,725 - +0.3 166,726 + -1.5 166,728 - +0.6 166,728 - +0.3 166,729 + -0.9 166,737 + -1.4 166,743 + +0.5 166,747 - -0.1 166,749 - -1.5 166,749 - -2.4 166,749 - -1.1 166,749 - -0.2 166,749 - +4.2 166,750 + -0.1 166,751 - -0.9 166,752 + +1.4 166,752 + +0.7 166,752 + +3.5 166,752 + -2.3 166,753 - +0.3 166,753 - +0.3 166,753 - +1.0 166,754 + +1.4 166,754 + -0.2 166,758 - +0.2 166,759 + +1.0 166,819 + -1.4 166,850 - -2.3 166,856 - +0.8 166,856 - -0.8 166,856 - +0.4 166,857 + -0.3 166,857 + +1.6 166,857 + -0.9 166,857 + -0.1 166,897 + +1.1 166,923 - MMP_RS00880 0.12 -1.6 166,956 - MMP_RS00880 0.21 -0.2 167,029 - MMP_RS00880 0.40 +0.5 167,032 + MMP_RS00880 0.40 -2.3 167,207 - MMP_RS00880 0.86 -1.0 167,262 + -0.0 167,906 + -1.8
Or see this region's nucleotide sequence