Experiment: McCas_H2_complete Antimycin A 0.01 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS00575 and MMP_RS00580 are separated by 157 nucleotides MMP_RS00580 and MMP_RS00585 are separated by 46 nucleotides MMP_RS00585 and MMP_RS00590 are separated by 8 nucleotides MMP_RS00590 and MMP_RS00595 are separated by 16 nucleotides MMP_RS00595 and MMP_RS00600 are separated by 40 nucleotides MMP_RS00600 and MMP_RS00605 are separated by 16 nucleotides MMP_RS00605 and MMP_RS00610 are separated by 33 nucleotides MMP_RS00610 and MMP_RS00615 are separated by 20 nucleotides MMP_RS00615 and MMP_RS00620 are separated by 52 nucleotides
MMP_RS00575: MMP_RS00575 - pyridoxal 5'-phosphate synthase lyase subunit PdxS, at 111,821 to 112,720
_RS00575
MMP_RS00580: MMP_RS00580 - tRNA-Thr, at 112,878 to 112,951
_RS00580
MMP_RS00585: MMP_RS00585 - tRNA-Pro, at 112,998 to 113,074
_RS00585
MMP_RS00590: MMP_RS00590 - tRNA-Tyr, at 113,083 to 113,156
_RS00590
MMP_RS00595: MMP_RS00595 - tRNA-Lys, at 113,173 to 113,246
_RS00595
MMP_RS00600: MMP_RS00600 - 5S ribosomal RNA, at 113,287 to 113,401
_RS00600
MMP_RS00605: MMP_RS00605 - tRNA-Asp, at 113,418 to 113,492
_RS00605
MMP_RS00610: MMP_RS00610 - tRNA-Lys, at 113,526 to 113,599
_RS00610
MMP_RS00615: MMP_RS00615 - tRNA-Asp, at 113,620 to 113,694
_RS00615
MMP_RS00620: MMP_RS00620 - 4Fe-4S binding protein, at 113,747 to 114,364
_RS00620
Position (kb)
113
114 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 112.635 kb on - strand at 112.669 kb on - strand at 112.734 kb on - strand at 112.734 kb on - strand at 112.751 kb on - strand at 112.752 kb on + strand at 112.777 kb on - strand at 112.798 kb on - strand at 112.798 kb on - strand at 112.799 kb on + strand at 112.799 kb on + strand at 112.809 kb on - strand at 113.770 kb on - strand at 113.806 kb on - strand at 113.886 kb on - strand, within MMP_RS00620 at 113.911 kb on + strand, within MMP_RS00620 at 113.953 kb on + strand, within MMP_RS00620 at 113.986 kb on + strand, within MMP_RS00620 at 114.042 kb on - strand, within MMP_RS00620 at 114.043 kb on + strand, within MMP_RS00620 at 114.055 kb on + strand, within MMP_RS00620 at 114.122 kb on + strand, within MMP_RS00620 at 114.122 kb on + strand, within MMP_RS00620 at 114.142 kb on - strand, within MMP_RS00620
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_H2_complete Antimycin A 0.01 mM remove 112,635 - +0.6 112,669 - -3.1 112,734 - +0.8 112,734 - +0.2 112,751 - +1.2 112,752 + +1.1 112,777 - +0.8 112,798 - +1.0 112,798 - +1.6 112,799 + +0.7 112,799 + -2.3 112,809 - -0.1 113,770 - +1.8 113,806 - +1.7 113,886 - MMP_RS00620 0.22 -0.2 113,911 + MMP_RS00620 0.27 +0.7 113,953 + MMP_RS00620 0.33 -0.0 113,986 + MMP_RS00620 0.39 -1.4 114,042 - MMP_RS00620 0.48 +0.2 114,043 + MMP_RS00620 0.48 +2.4 114,055 + MMP_RS00620 0.50 +0.0 114,122 + MMP_RS00620 0.61 -1.4 114,122 + MMP_RS00620 0.61 -0.3 114,142 - MMP_RS00620 0.64 -0.1
Or see this region's nucleotide sequence