Strain Fitness in Methanococcus maripaludis S2 around MMP_RS01120

Experiment: McCas_H2_complete dimetridazole 0.000833333333333333 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS01115 and MMP_RS01120 are separated by 789 nucleotidesMMP_RS01120 and MMP_RS01125 are separated by 42 nucleotidesMMP_RS01125 and MMP_RS01130 are separated by 69 nucleotides MMP_RS01115: MMP_RS01115 - molybdopterin molybdotransferase MoeA, at 208,252 to 209,379 _RS01115 MMP_RS01120: MMP_RS01120 - permease, at 210,169 to 211,125 _RS01120 MMP_RS01125: MMP_RS01125 - thioredoxin family protein, at 211,168 to 211,401 _RS01125 MMP_RS01130: MMP_RS01130 - flavoprotein, at 211,471 to 212,001 _RS01130 Position (kb) 210 211 212Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 209.293 kb on + strandat 209.377 kb on - strandat 209.380 kb on - strandat 209.384 kb on + strandat 209.386 kb on - strandat 209.388 kb on - strandat 209.388 kb on - strandat 209.388 kb on - strandat 209.388 kb on - strandat 209.389 kb on + strandat 209.393 kb on + strandat 209.393 kb on + strandat 209.393 kb on + strandat 209.519 kb on - strandat 209.549 kb on - strandat 209.549 kb on - strandat 209.550 kb on + strandat 209.555 kb on - strandat 209.560 kb on + strandat 209.573 kb on - strandat 209.643 kb on - strandat 209.644 kb on + strandat 209.645 kb on - strandat 209.645 kb on - strandat 209.646 kb on + strandat 209.646 kb on + strandat 209.646 kb on + strandat 209.656 kb on - strandat 209.656 kb on - strandat 209.658 kb on - strandat 209.659 kb on + strandat 209.670 kb on - strandat 209.678 kb on - strandat 209.678 kb on - strandat 209.688 kb on + strandat 209.689 kb on - strandat 209.689 kb on - strandat 209.689 kb on - strandat 209.690 kb on + strandat 209.691 kb on - strandat 209.691 kb on - strandat 209.691 kb on - strandat 209.692 kb on + strandat 209.692 kb on + strandat 209.705 kb on + strandat 209.746 kb on + strandat 209.773 kb on - strandat 209.776 kb on - strandat 209.791 kb on + strandat 209.801 kb on - strandat 209.820 kb on + strandat 209.840 kb on - strandat 209.841 kb on + strandat 209.947 kb on - strandat 209.947 kb on - strandat 209.955 kb on - strandat 209.959 kb on - strandat 209.959 kb on - strandat 209.959 kb on - strandat 210.003 kb on + strandat 210.010 kb on - strandat 210.010 kb on - strandat 210.010 kb on - strandat 210.010 kb on - strandat 210.011 kb on + strandat 210.012 kb on - strandat 210.012 kb on - strandat 210.012 kb on - strandat 210.013 kb on + strandat 210.013 kb on + strandat 210.013 kb on + strandat 210.013 kb on + strandat 210.013 kb on + strandat 210.014 kb on - strandat 210.055 kb on - strandat 210.055 kb on - strandat 210.055 kb on - strandat 210.055 kb on - strandat 210.057 kb on - strandat 210.057 kb on - strandat 210.062 kb on - strandat 210.062 kb on - strandat 210.066 kb on - strandat 210.066 kb on - strandat 210.066 kb on - strandat 210.067 kb on + strandat 210.067 kb on + strandat 210.123 kb on - strandat 210.188 kb on + strandat 210.201 kb on - strandat 210.202 kb on + strandat 210.290 kb on - strand, within MMP_RS01120at 210.309 kb on + strand, within MMP_RS01120at 210.309 kb on + strand, within MMP_RS01120at 210.309 kb on + strand, within MMP_RS01120at 210.322 kb on - strand, within MMP_RS01120at 210.327 kb on - strand, within MMP_RS01120at 210.328 kb on + strand, within MMP_RS01120at 210.334 kb on - strand, within MMP_RS01120at 210.407 kb on - strand, within MMP_RS01120at 210.624 kb on - strand, within MMP_RS01120at 210.664 kb on - strand, within MMP_RS01120at 210.669 kb on + strand, within MMP_RS01120at 211.030 kb on + strandat 211.184 kb on - strandat 211.217 kb on + strand, within MMP_RS01125at 211.253 kb on - strand, within MMP_RS01125at 211.254 kb on + strand, within MMP_RS01125at 211.300 kb on - strand, within MMP_RS01125at 211.300 kb on - strand, within MMP_RS01125at 211.300 kb on - strand, within MMP_RS01125at 211.301 kb on + strand, within MMP_RS01125at 211.301 kb on + strand, within MMP_RS01125at 211.305 kb on + strand, within MMP_RS01125at 211.325 kb on - strand, within MMP_RS01125at 211.416 kb on + strandat 211.429 kb on - strandat 211.429 kb on - strandat 211.455 kb on - strandat 211.455 kb on - strandat 211.456 kb on + strandat 211.456 kb on + strandat 211.457 kb on - strandat 211.457 kb on - strandat 211.458 kb on + strandat 211.458 kb on + strandat 211.458 kb on + strandat 211.458 kb on + strandat 211.496 kb on - strandat 211.497 kb on + strandat 211.500 kb on - strandat 211.678 kb on - strand, within MMP_RS01130at 211.678 kb on - strand, within MMP_RS01130at 211.746 kb on - strand, within MMP_RS01130at 211.747 kb on + strand, within MMP_RS01130at 211.770 kb on - strand, within MMP_RS01130at 211.773 kb on + strand, within MMP_RS01130at 211.806 kb on - strand, within MMP_RS01130at 211.807 kb on + strand, within MMP_RS01130at 211.880 kb on - strand, within MMP_RS01130at 212.008 kb on - strandat 212.008 kb on - strandat 212.009 kb on + strandat 212.012 kb on - strandat 212.013 kb on + strandat 212.017 kb on + strandat 212.018 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction McCas_H2_complete dimetridazole 0.000833333333333333 mM
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209,293 + -1.6
209,377 - +1.3
209,380 - +0.8
209,384 + +0.4
209,386 - +0.0
209,388 - +0.2
209,388 - -4.0
209,388 - +1.7
209,388 - +1.3
209,389 + +0.1
209,393 + +0.4
209,393 + +0.0
209,393 + +1.0
209,519 - +1.8
209,549 - +2.5
209,549 - +1.1
209,550 + -0.8
209,555 - +2.0
209,560 + +0.6
209,573 - +1.0
209,643 - +0.7
209,644 + +1.2
209,645 - -0.9
209,645 - +4.0
209,646 + -2.3
209,646 + -0.1
209,646 + -0.8
209,656 - -2.5
209,656 - +0.3
209,658 - +0.3
209,659 + +0.3
209,670 - +1.1
209,678 - +3.2
209,678 - -1.5
209,688 + +0.8
209,689 - +0.4
209,689 - -0.5
209,689 - +1.2
209,690 + +0.3
209,691 - -2.1
209,691 - +0.1
209,691 - +1.2
209,692 + +0.9
209,692 + -0.3
209,705 + +1.6
209,746 + +2.2
209,773 - +0.5
209,776 - -0.5
209,791 + -3.3
209,801 - +0.4
209,820 + -1.4
209,840 - -0.4
209,841 + +0.4
209,947 - +1.6
209,947 - +1.2
209,955 - +0.7
209,959 - -0.8
209,959 - -0.2
209,959 - +1.3
210,003 + +1.4
210,010 - +0.5
210,010 - +1.3
210,010 - +0.0
210,010 - +1.5
210,011 + +2.9
210,012 - +0.7
210,012 - +2.0
210,012 - +1.2
210,013 + +0.2
210,013 + +1.9
210,013 + +0.9
210,013 + +2.5
210,013 + +0.2
210,014 - +0.6
210,055 - +2.6
210,055 - +0.8
210,055 - -2.1
210,055 - -2.1
210,057 - +0.4
210,057 - +0.7
210,062 - -0.4
210,062 - +0.4
210,066 - +1.0
210,066 - +0.0
210,066 - +2.7
210,067 + -1.0
210,067 + -3.4
210,123 - +0.6
210,188 + +1.2
210,201 - -0.5
210,202 + -1.1
210,290 - MMP_RS01120 0.13 +1.8
210,309 + MMP_RS01120 0.15 +1.1
210,309 + MMP_RS01120 0.15 +2.1
210,309 + MMP_RS01120 0.15 +0.1
210,322 - MMP_RS01120 0.16 -0.5
210,327 - MMP_RS01120 0.17 +1.1
210,328 + MMP_RS01120 0.17 +0.5
210,334 - MMP_RS01120 0.17 -0.1
210,407 - MMP_RS01120 0.25 -0.5
210,624 - MMP_RS01120 0.48 +0.5
210,664 - MMP_RS01120 0.52 +1.9
210,669 + MMP_RS01120 0.52 -0.3
211,030 + -0.5
211,184 - -2.3
211,217 + MMP_RS01125 0.21 -3.1
211,253 - MMP_RS01125 0.36 -2.2
211,254 + MMP_RS01125 0.37 +1.1
211,300 - MMP_RS01125 0.56 -1.1
211,300 - MMP_RS01125 0.56 -0.5
211,300 - MMP_RS01125 0.56 -0.6
211,301 + MMP_RS01125 0.57 +2.2
211,301 + MMP_RS01125 0.57 -1.3
211,305 + MMP_RS01125 0.59 -1.9
211,325 - MMP_RS01125 0.67 +0.2
211,416 + +0.2
211,429 - +0.7
211,429 - -0.1
211,455 - -0.0
211,455 - +1.1
211,456 + +1.7
211,456 + +0.4
211,457 - +0.1
211,457 - -1.9
211,458 + +0.9
211,458 + +1.2
211,458 + -0.2
211,458 + +1.0
211,496 - +2.8
211,497 + -0.9
211,500 - +3.2
211,678 - MMP_RS01130 0.39 +2.8
211,678 - MMP_RS01130 0.39 +0.2
211,746 - MMP_RS01130 0.52 +1.6
211,747 + MMP_RS01130 0.52 +0.5
211,770 - MMP_RS01130 0.56 +0.7
211,773 + MMP_RS01130 0.57 +1.3
211,806 - MMP_RS01130 0.63 -0.2
211,807 + MMP_RS01130 0.63 +0.4
211,880 - MMP_RS01130 0.77 +0.6
212,008 - +2.0
212,008 - +1.1
212,009 + -0.5
212,012 - +1.6
212,013 + +0.6
212,017 + +0.9
212,018 - +2.0

Or see this region's nucleotide sequence