Experiment: McCas_H2_complete selenate 62.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS04615 and MMP_RS04620 overlap by 8 nucleotides MMP_RS04620 and MMP_RS04625 are separated by 197 nucleotides MMP_RS04625 and MMP_RS04630 are separated by 213 nucleotides MMP_RS04630 and MMP_RS04635 are separated by 23 nucleotides
MMP_RS04615: MMP_RS04615 - PDGLE domain-containing protein, at 880,636 to 880,962
_RS04615
MMP_RS04620: MMP_RS04620 - cobalt transporter CbiM, at 880,955 to 881,593
_RS04620
MMP_RS04625: MMP_RS04625 - DEAD/DEAH box helicase, at 881,791 to 884,034
_RS04625
MMP_RS04630: MMP_RS04630 - 3'-5' exonuclease, at 884,248 to 884,823
_RS04630
MMP_RS04635: MMP_RS04635 - GNAT family N-acetyltransferase, at 884,847 to 885,395
_RS04635
Position (kb) 881
882
883
884
885 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 880.889 kb on + strand, within MMP_RS04615 at 880.912 kb on - strand at 880.912 kb on - strand, within MMP_RS04615 at 880.913 kb on + strand, within MMP_RS04615 at 881.024 kb on - strand, within MMP_RS04620 at 881.223 kb on - strand, within MMP_RS04620 at 881.223 kb on - strand, within MMP_RS04620 at 881.223 kb on - strand, within MMP_RS04620 at 881.224 kb on + strand, within MMP_RS04620 at 881.224 kb on + strand, within MMP_RS04620 at 881.224 kb on + strand, within MMP_RS04620 at 881.224 kb on + strand, within MMP_RS04620 at 881.224 kb on + strand, within MMP_RS04620 at 881.224 kb on + strand, within MMP_RS04620 at 881.224 kb on + strand, within MMP_RS04620 at 881.224 kb on + strand, within MMP_RS04620 at 881.224 kb on + strand, within MMP_RS04620 at 881.232 kb on + strand, within MMP_RS04620 at 881.319 kb on + strand, within MMP_RS04620 at 881.331 kb on + strand, within MMP_RS04620 at 881.337 kb on + strand, within MMP_RS04620 at 881.340 kb on + strand, within MMP_RS04620 at 881.366 kb on - strand, within MMP_RS04620 at 881.415 kb on + strand, within MMP_RS04620 at 881.446 kb on - strand, within MMP_RS04620 at 881.464 kb on - strand, within MMP_RS04620 at 881.522 kb on - strand, within MMP_RS04620 at 881.523 kb on + strand, within MMP_RS04620 at 881.572 kb on - strand at 881.585 kb on - strand at 881.585 kb on - strand at 881.585 kb on - strand at 881.585 kb on - strand at 881.631 kb on + strand at 881.634 kb on - strand at 881.635 kb on + strand at 881.646 kb on - strand at 881.646 kb on - strand at 881.649 kb on - strand at 881.649 kb on - strand at 881.649 kb on - strand at 881.650 kb on + strand at 881.650 kb on + strand at 881.650 kb on + strand at 881.650 kb on + strand at 881.650 kb on + strand at 881.663 kb on - strand at 881.668 kb on + strand at 881.675 kb on + strand at 881.684 kb on - strand at 881.684 kb on - strand at 881.688 kb on + strand at 881.690 kb on - strand at 881.691 kb on + strand at 881.691 kb on + strand at 881.694 kb on - strand at 881.695 kb on + strand at 881.695 kb on + strand at 881.695 kb on + strand at 881.700 kb on - strand at 881.701 kb on + strand at 881.703 kb on - strand at 881.703 kb on - strand at 881.703 kb on - strand at 881.703 kb on - strand at 881.703 kb on - strand at 881.704 kb on + strand at 881.704 kb on + strand at 881.704 kb on + strand at 881.704 kb on + strand at 881.707 kb on - strand at 881.707 kb on - strand at 881.707 kb on - strand at 881.707 kb on - strand at 881.708 kb on + strand at 881.736 kb on + strand at 881.740 kb on - strand at 881.740 kb on - strand at 881.743 kb on + strand at 881.758 kb on + strand at 881.799 kb on + strand at 881.835 kb on + strand at 881.902 kb on + strand at 882.011 kb on - strand at 882.072 kb on + strand, within MMP_RS04625 at 882.105 kb on - strand, within MMP_RS04625 at 882.106 kb on + strand, within MMP_RS04625 at 882.135 kb on - strand, within MMP_RS04625 at 882.136 kb on + strand, within MMP_RS04625 at 882.136 kb on + strand, within MMP_RS04625 at 882.136 kb on + strand, within MMP_RS04625 at 882.141 kb on - strand, within MMP_RS04625 at 882.142 kb on + strand, within MMP_RS04625 at 882.142 kb on + strand, within MMP_RS04625 at 882.142 kb on + strand, within MMP_RS04625 at 882.198 kb on + strand, within MMP_RS04625 at 882.198 kb on + strand, within MMP_RS04625 at 882.203 kb on - strand, within MMP_RS04625 at 882.228 kb on + strand, within MMP_RS04625 at 882.258 kb on + strand, within MMP_RS04625 at 882.258 kb on + strand, within MMP_RS04625 at 882.392 kb on - strand, within MMP_RS04625 at 882.474 kb on - strand, within MMP_RS04625 at 882.699 kb on + strand, within MMP_RS04625 at 882.724 kb on - strand, within MMP_RS04625 at 882.771 kb on + strand, within MMP_RS04625 at 883.170 kb on + strand, within MMP_RS04625 at 883.479 kb on + strand, within MMP_RS04625 at 883.641 kb on + strand, within MMP_RS04625 at 883.641 kb on + strand, within MMP_RS04625 at 883.641 kb on + strand, within MMP_RS04625 at 883.650 kb on + strand, within MMP_RS04625 at 883.703 kb on + strand, within MMP_RS04625 at 883.783 kb on - strand, within MMP_RS04625 at 883.784 kb on + strand, within MMP_RS04625 at 883.891 kb on - strand at 883.911 kb on - strand at 884.002 kb on - strand at 884.043 kb on - strand at 884.064 kb on + strand at 884.149 kb on + strand at 884.159 kb on - strand at 884.159 kb on - strand at 884.159 kb on - strand at 884.160 kb on + strand at 884.163 kb on - strand at 884.166 kb on + strand at 884.173 kb on + strand at 884.184 kb on - strand at 884.185 kb on + strand at 884.185 kb on + strand at 884.186 kb on - strand at 884.186 kb on - strand at 884.186 kb on - strand at 884.186 kb on - strand at 884.186 kb on - strand at 884.186 kb on - strand at 884.187 kb on + strand at 884.187 kb on + strand at 884.187 kb on + strand at 884.187 kb on + strand at 884.187 kb on + strand at 884.187 kb on + strand at 884.187 kb on + strand at 884.188 kb on - strand at 884.188 kb on - strand at 884.188 kb on - strand at 884.188 kb on - strand at 884.188 kb on - strand at 884.189 kb on + strand at 884.189 kb on + strand at 884.189 kb on + strand at 884.189 kb on + strand at 884.189 kb on + strand at 884.189 kb on + strand at 884.190 kb on - strand at 884.190 kb on - strand at 884.190 kb on - strand at 884.190 kb on - strand at 884.190 kb on - strand at 884.190 kb on - strand at 884.190 kb on - strand at 884.190 kb on - strand at 884.191 kb on + strand at 884.191 kb on + strand at 884.191 kb on + strand at 884.191 kb on + strand at 884.191 kb on + strand at 884.191 kb on + strand at 884.191 kb on + strand at 884.200 kb on + strand at 884.262 kb on + strand at 884.471 kb on - strand, within MMP_RS04630 at 884.496 kb on + strand, within MMP_RS04630 at 884.511 kb on - strand, within MMP_RS04630 at 884.525 kb on - strand, within MMP_RS04630 at 884.581 kb on + strand, within MMP_RS04630 at 884.581 kb on + strand, within MMP_RS04630 at 884.638 kb on - strand, within MMP_RS04630 at 884.641 kb on + strand, within MMP_RS04630 at 884.756 kb on + strand, within MMP_RS04630 at 884.769 kb on + strand at 884.771 kb on - strand at 884.771 kb on - strand at 884.771 kb on - strand at 884.773 kb on - strand at 884.774 kb on + strand at 884.810 kb on - strand at 884.811 kb on + strand at 884.837 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_H2_complete selenate 62.5 mM remove 880,889 + MMP_RS04615 0.77 -0.0 880,912 - -1.2 880,912 - MMP_RS04615 0.84 -0.9 880,913 + MMP_RS04615 0.85 -1.3 881,024 - MMP_RS04620 0.11 -0.4 881,223 - MMP_RS04620 0.42 -0.5 881,223 - MMP_RS04620 0.42 +2.1 881,223 - MMP_RS04620 0.42 +0.9 881,224 + MMP_RS04620 0.42 +0.2 881,224 + MMP_RS04620 0.42 -0.7 881,224 + MMP_RS04620 0.42 -0.9 881,224 + MMP_RS04620 0.42 -0.5 881,224 + MMP_RS04620 0.42 +0.8 881,224 + MMP_RS04620 0.42 -0.1 881,224 + MMP_RS04620 0.42 +0.8 881,224 + MMP_RS04620 0.42 +0.7 881,224 + MMP_RS04620 0.42 -0.1 881,232 + MMP_RS04620 0.43 -2.0 881,319 + MMP_RS04620 0.57 -1.9 881,331 + MMP_RS04620 0.59 +0.9 881,337 + MMP_RS04620 0.60 -0.2 881,340 + MMP_RS04620 0.60 +0.5 881,366 - MMP_RS04620 0.64 -0.7 881,415 + MMP_RS04620 0.72 -0.4 881,446 - MMP_RS04620 0.77 +0.6 881,464 - MMP_RS04620 0.80 -1.7 881,522 - MMP_RS04620 0.89 -0.2 881,523 + MMP_RS04620 0.89 -0.2 881,572 - +0.3 881,585 - -2.5 881,585 - +0.2 881,585 - -1.6 881,585 - +0.0 881,631 + -1.7 881,634 - +0.2 881,635 + -0.3 881,646 - -0.7 881,646 - -3.0 881,649 - -1.3 881,649 - -0.4 881,649 - -0.1 881,650 + -0.8 881,650 + +0.1 881,650 + -0.1 881,650 + -0.2 881,650 + -0.5 881,663 - -0.9 881,668 + +0.1 881,675 + -0.4 881,684 - -0.5 881,684 - -0.4 881,688 + +0.1 881,690 - +0.5 881,691 + -0.3 881,691 + +0.5 881,694 - +0.7 881,695 + -0.8 881,695 + +0.1 881,695 + +0.3 881,700 - -0.7 881,701 + +0.4 881,703 - -0.4 881,703 - +0.5 881,703 - -0.4 881,703 - -0.2 881,703 - -0.1 881,704 + -0.5 881,704 + -0.7 881,704 + +0.8 881,704 + +0.4 881,707 - +0.9 881,707 - -0.6 881,707 - -0.3 881,707 - -0.6 881,708 + -0.1 881,736 + -0.7 881,740 - +0.6 881,740 - -1.4 881,743 + -0.6 881,758 + -0.5 881,799 + +0.9 881,835 + -1.2 881,902 + -1.0 882,011 - -2.0 882,072 + MMP_RS04625 0.13 -0.6 882,105 - MMP_RS04625 0.14 -1.1 882,106 + MMP_RS04625 0.14 -5.1 882,135 - MMP_RS04625 0.15 -0.7 882,136 + MMP_RS04625 0.15 -1.4 882,136 + MMP_RS04625 0.15 -0.7 882,136 + MMP_RS04625 0.15 -0.3 882,141 - MMP_RS04625 0.16 -1.6 882,142 + MMP_RS04625 0.16 -0.1 882,142 + MMP_RS04625 0.16 -0.2 882,142 + MMP_RS04625 0.16 +0.3 882,198 + MMP_RS04625 0.18 +1.3 882,198 + MMP_RS04625 0.18 -1.5 882,203 - MMP_RS04625 0.18 -1.7 882,228 + MMP_RS04625 0.19 -1.9 882,258 + MMP_RS04625 0.21 +1.8 882,258 + MMP_RS04625 0.21 -1.5 882,392 - MMP_RS04625 0.27 +0.1 882,474 - MMP_RS04625 0.30 -0.3 882,699 + MMP_RS04625 0.40 +0.8 882,724 - MMP_RS04625 0.42 -0.7 882,771 + MMP_RS04625 0.44 +0.2 883,170 + MMP_RS04625 0.61 -1.4 883,479 + MMP_RS04625 0.75 -1.3 883,641 + MMP_RS04625 0.82 -1.8 883,641 + MMP_RS04625 0.82 -0.9 883,641 + MMP_RS04625 0.82 -0.3 883,650 + MMP_RS04625 0.83 -0.8 883,703 + MMP_RS04625 0.85 -0.8 883,783 - MMP_RS04625 0.89 +0.0 883,784 + MMP_RS04625 0.89 -0.3 883,891 - +0.4 883,911 - -0.8 884,002 - -0.4 884,043 - +0.6 884,064 + -0.9 884,149 + +0.4 884,159 - +1.0 884,159 - +0.0 884,159 - -1.7 884,160 + -0.6 884,163 - +1.5 884,166 + +0.2 884,173 + -1.7 884,184 - -0.4 884,185 + -1.7 884,185 + -0.3 884,186 - +0.2 884,186 - -0.1 884,186 - -0.6 884,186 - -0.8 884,186 - -3.0 884,186 - +0.9 884,187 + +0.3 884,187 + -0.0 884,187 + -0.3 884,187 + -0.7 884,187 + -0.2 884,187 + -0.3 884,187 + +1.8 884,188 - +0.5 884,188 - -0.8 884,188 - -0.6 884,188 - -0.6 884,188 - +0.6 884,189 + -0.8 884,189 + -0.6 884,189 + +0.1 884,189 + -1.3 884,189 + +0.1 884,189 + -0.0 884,190 - -0.7 884,190 - -0.8 884,190 - -1.9 884,190 - +0.7 884,190 - +0.5 884,190 - +2.2 884,190 - -0.5 884,190 - +0.1 884,191 + +0.7 884,191 + -1.3 884,191 + +0.1 884,191 + +0.0 884,191 + -0.6 884,191 + +2.1 884,191 + +0.7 884,200 + +0.9 884,262 + -1.6 884,471 - MMP_RS04630 0.39 -0.6 884,496 + MMP_RS04630 0.43 +0.4 884,511 - MMP_RS04630 0.46 +0.2 884,525 - MMP_RS04630 0.48 -0.1 884,581 + MMP_RS04630 0.58 -0.3 884,581 + MMP_RS04630 0.58 +0.4 884,638 - MMP_RS04630 0.68 -0.6 884,641 + MMP_RS04630 0.68 -1.1 884,756 + MMP_RS04630 0.88 +0.4 884,769 + -0.2 884,771 - +0.5 884,771 - -0.6 884,771 - -0.8 884,773 - -0.5 884,774 + +0.6 884,810 - -0.1 884,811 + -2.4 884,837 + +1.0
Or see this region's nucleotide sequence