Experiment: McCas_H2_complete selenate 62.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS02250 and MMP_RS02255 are separated by 126 nucleotides MMP_RS02255 and MMP_RS02260 are separated by 406 nucleotides
MMP_RS02250: MMP_RS02250 - FRG domain-containing protein, at 424,800 to 426,188
_RS02250
MMP_RS02255: MMP_RS02255 - hypothetical protein, at 426,315 to 426,530
_RS02255
MMP_RS02260: MMP_RS02260 - lactate utilization protein, at 426,937 to 427,578
_RS02260
Position (kb) 426
427 Strain fitness (log2 ratio) -2
-1
0
1
2 at 425.372 kb on + strand, within MMP_RS02250 at 425.401 kb on + strand, within MMP_RS02250 at 425.472 kb on + strand, within MMP_RS02250 at 425.477 kb on + strand, within MMP_RS02250 at 425.481 kb on - strand, within MMP_RS02250 at 425.525 kb on - strand, within MMP_RS02250 at 425.525 kb on - strand, within MMP_RS02250 at 425.525 kb on - strand, within MMP_RS02250 at 425.530 kb on - strand, within MMP_RS02250 at 425.530 kb on - strand, within MMP_RS02250 at 425.556 kb on + strand, within MMP_RS02250 at 425.779 kb on - strand, within MMP_RS02250 at 425.780 kb on + strand, within MMP_RS02250 at 425.780 kb on + strand, within MMP_RS02250 at 425.841 kb on + strand, within MMP_RS02250 at 425.868 kb on - strand, within MMP_RS02250 at 425.904 kb on + strand, within MMP_RS02250 at 426.002 kb on - strand, within MMP_RS02250 at 426.008 kb on - strand, within MMP_RS02250 at 426.026 kb on - strand, within MMP_RS02250 at 426.026 kb on - strand, within MMP_RS02250 at 426.027 kb on + strand, within MMP_RS02250 at 426.027 kb on + strand, within MMP_RS02250 at 426.062 kb on - strand at 426.063 kb on + strand at 426.186 kb on - strand at 426.221 kb on + strand at 426.385 kb on - strand, within MMP_RS02255 at 426.402 kb on + strand, within MMP_RS02255 at 426.402 kb on + strand, within MMP_RS02255 at 426.456 kb on - strand, within MMP_RS02255 at 426.461 kb on - strand, within MMP_RS02255 at 426.486 kb on + strand, within MMP_RS02255 at 426.506 kb on - strand, within MMP_RS02255 at 426.506 kb on - strand, within MMP_RS02255 at 426.567 kb on - strand at 426.568 kb on + strand at 426.571 kb on - strand at 426.578 kb on + strand at 426.609 kb on + strand at 426.613 kb on - strand at 426.654 kb on + strand at 426.672 kb on + strand at 426.688 kb on - strand at 426.733 kb on + strand at 426.780 kb on - strand at 426.842 kb on - strand at 426.868 kb on - strand at 426.869 kb on + strand at 426.874 kb on - strand at 426.874 kb on - strand at 426.874 kb on - strand at 426.875 kb on + strand at 426.875 kb on + strand at 426.883 kb on - strand at 426.884 kb on + strand at 427.051 kb on - strand, within MMP_RS02260 at 427.051 kb on - strand, within MMP_RS02260 at 427.052 kb on + strand, within MMP_RS02260 at 427.053 kb on - strand, within MMP_RS02260 at 427.063 kb on - strand, within MMP_RS02260 at 427.064 kb on + strand, within MMP_RS02260 at 427.123 kb on + strand, within MMP_RS02260 at 427.204 kb on + strand, within MMP_RS02260 at 427.204 kb on + strand, within MMP_RS02260 at 427.205 kb on - strand, within MMP_RS02260 at 427.205 kb on - strand, within MMP_RS02260 at 427.232 kb on - strand, within MMP_RS02260 at 427.236 kb on - strand, within MMP_RS02260 at 427.277 kb on - strand, within MMP_RS02260 at 427.277 kb on - strand, within MMP_RS02260 at 427.356 kb on - strand, within MMP_RS02260 at 427.469 kb on - strand, within MMP_RS02260 at 427.505 kb on + strand, within MMP_RS02260 at 427.516 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_H2_complete selenate 62.5 mM remove 425,372 + MMP_RS02250 0.41 +0.8 425,401 + MMP_RS02250 0.43 -0.3 425,472 + MMP_RS02250 0.48 +0.8 425,477 + MMP_RS02250 0.49 +0.2 425,481 - MMP_RS02250 0.49 +0.7 425,525 - MMP_RS02250 0.52 +0.6 425,525 - MMP_RS02250 0.52 +0.6 425,525 - MMP_RS02250 0.52 +1.6 425,530 - MMP_RS02250 0.53 -1.4 425,530 - MMP_RS02250 0.53 -1.0 425,556 + MMP_RS02250 0.54 +0.1 425,779 - MMP_RS02250 0.70 +0.7 425,780 + MMP_RS02250 0.71 +0.5 425,780 + MMP_RS02250 0.71 +0.5 425,841 + MMP_RS02250 0.75 -1.4 425,868 - MMP_RS02250 0.77 +0.5 425,904 + MMP_RS02250 0.79 +0.3 426,002 - MMP_RS02250 0.87 -0.5 426,008 - MMP_RS02250 0.87 -0.2 426,026 - MMP_RS02250 0.88 -0.4 426,026 - MMP_RS02250 0.88 +0.2 426,027 + MMP_RS02250 0.88 -0.2 426,027 + MMP_RS02250 0.88 +1.8 426,062 - -0.4 426,063 + +1.2 426,186 - +0.5 426,221 + -0.3 426,385 - MMP_RS02255 0.32 -0.1 426,402 + MMP_RS02255 0.40 -1.5 426,402 + MMP_RS02255 0.40 -2.1 426,456 - MMP_RS02255 0.65 -0.9 426,461 - MMP_RS02255 0.68 -0.2 426,486 + MMP_RS02255 0.79 +0.5 426,506 - MMP_RS02255 0.88 -0.3 426,506 - MMP_RS02255 0.88 +0.1 426,567 - -0.8 426,568 + +0.5 426,571 - +0.0 426,578 + -1.1 426,609 + +0.7 426,613 - -0.3 426,654 + -0.6 426,672 + -0.0 426,688 - -0.2 426,733 + -0.5 426,780 - -0.4 426,842 - -1.6 426,868 - -0.6 426,869 + -0.4 426,874 - +0.1 426,874 - -0.7 426,874 - +0.1 426,875 + -1.4 426,875 + -0.9 426,883 - -0.1 426,884 + -0.1 427,051 - MMP_RS02260 0.18 +0.1 427,051 - MMP_RS02260 0.18 +1.1 427,052 + MMP_RS02260 0.18 +0.9 427,053 - MMP_RS02260 0.18 +0.3 427,063 - MMP_RS02260 0.20 +0.4 427,064 + MMP_RS02260 0.20 +0.7 427,123 + MMP_RS02260 0.29 -0.3 427,204 + MMP_RS02260 0.42 +0.5 427,204 + MMP_RS02260 0.42 +1.1 427,205 - MMP_RS02260 0.42 -0.6 427,205 - MMP_RS02260 0.42 +0.1 427,232 - MMP_RS02260 0.46 +1.7 427,236 - MMP_RS02260 0.47 -0.4 427,277 - MMP_RS02260 0.53 +0.0 427,277 - MMP_RS02260 0.53 -0.7 427,356 - MMP_RS02260 0.65 +0.8 427,469 - MMP_RS02260 0.83 +1.2 427,505 + MMP_RS02260 0.88 -1.9 427,516 + +0.0
Or see this region's nucleotide sequence