Experiment: McCas_H2_complete potassium hexahydroxoantimonate 0.125 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS03780 and MMP_RS03785 are separated by 17 nucleotides MMP_RS03785 and MMP_RS03790 are separated by 139 nucleotides MMP_RS03790 and MMP_RS03795 are separated by 7 nucleotides MMP_RS03795 and MMP_RS03800 are separated by 352 nucleotides
MMP_RS03780: MMP_RS03780 - 4Fe-4S binding protein, at 714,854 to 715,381
_RS03780
MMP_RS03785: MMP_RS03785 - cupin domain-containing protein, at 715,399 to 715,743
_RS03785
MMP_RS03790: MMP_RS03790 - hypothetical protein, at 715,883 to 716,317
_RS03790
MMP_RS03795: MMP_RS03795 - YqhA family protein, at 716,325 to 716,882
_RS03795
MMP_RS03800: MMP_RS03800 - hypothetical protein, at 717,235 to 717,468
_RS03800
Position (kb) 715
716
717 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 714.887 kb on - strand at 714.890 kb on - strand at 714.923 kb on + strand, within MMP_RS03780 at 714.942 kb on - strand, within MMP_RS03780 at 714.949 kb on - strand, within MMP_RS03780 at 715.023 kb on - strand, within MMP_RS03780 at 715.027 kb on - strand, within MMP_RS03780 at 715.090 kb on - strand, within MMP_RS03780 at 715.122 kb on - strand, within MMP_RS03780 at 715.184 kb on + strand, within MMP_RS03780 at 715.216 kb on + strand, within MMP_RS03780 at 715.254 kb on - strand, within MMP_RS03780 at 715.341 kb on - strand at 715.367 kb on - strand at 715.461 kb on - strand, within MMP_RS03785 at 715.573 kb on + strand, within MMP_RS03785 at 715.614 kb on - strand, within MMP_RS03785 at 715.735 kb on + strand at 715.780 kb on - strand at 715.794 kb on - strand at 715.798 kb on - strand at 715.798 kb on - strand at 715.798 kb on - strand at 715.821 kb on - strand at 715.822 kb on + strand at 715.822 kb on + strand at 715.822 kb on + strand at 715.822 kb on + strand at 715.824 kb on + strand at 715.870 kb on - strand at 715.892 kb on - strand at 715.893 kb on + strand at 716.093 kb on - strand, within MMP_RS03790 at 716.114 kb on - strand, within MMP_RS03790 at 716.140 kb on + strand, within MMP_RS03790 at 716.140 kb on - strand, within MMP_RS03790 at 716.140 kb on - strand, within MMP_RS03790 at 716.141 kb on + strand, within MMP_RS03790 at 716.142 kb on - strand, within MMP_RS03790 at 716.142 kb on - strand, within MMP_RS03790 at 716.144 kb on - strand, within MMP_RS03790 at 716.145 kb on + strand, within MMP_RS03790 at 716.145 kb on + strand, within MMP_RS03790 at 716.145 kb on + strand, within MMP_RS03790 at 716.165 kb on + strand, within MMP_RS03790 at 716.206 kb on + strand, within MMP_RS03790 at 716.252 kb on - strand, within MMP_RS03790 at 716.252 kb on - strand, within MMP_RS03790 at 716.258 kb on - strand, within MMP_RS03790 at 716.259 kb on + strand, within MMP_RS03790 at 716.326 kb on - strand at 716.350 kb on - strand at 716.388 kb on + strand, within MMP_RS03795 at 716.389 kb on - strand, within MMP_RS03795 at 716.389 kb on - strand, within MMP_RS03795 at 716.389 kb on - strand, within MMP_RS03795 at 716.389 kb on - strand, within MMP_RS03795 at 716.389 kb on - strand, within MMP_RS03795 at 716.389 kb on - strand, within MMP_RS03795 at 716.390 kb on + strand, within MMP_RS03795 at 716.390 kb on + strand, within MMP_RS03795 at 716.390 kb on + strand, within MMP_RS03795 at 716.391 kb on - strand, within MMP_RS03795 at 716.392 kb on + strand, within MMP_RS03795 at 716.392 kb on + strand, within MMP_RS03795 at 716.392 kb on + strand, within MMP_RS03795 at 716.425 kb on + strand, within MMP_RS03795 at 716.615 kb on + strand, within MMP_RS03795 at 716.686 kb on - strand, within MMP_RS03795 at 716.693 kb on - strand, within MMP_RS03795 at 716.693 kb on - strand, within MMP_RS03795 at 716.694 kb on + strand, within MMP_RS03795 at 716.700 kb on + strand, within MMP_RS03795 at 716.700 kb on + strand, within MMP_RS03795 at 716.706 kb on - strand, within MMP_RS03795 at 716.707 kb on + strand, within MMP_RS03795 at 716.773 kb on + strand, within MMP_RS03795 at 716.886 kb on - strand at 716.894 kb on - strand at 716.906 kb on - strand at 716.906 kb on - strand at 716.927 kb on - strand at 716.964 kb on - strand at 716.965 kb on + strand at 717.017 kb on + strand at 717.040 kb on - strand at 717.041 kb on + strand at 717.042 kb on - strand at 717.043 kb on + strand at 717.045 kb on + strand at 717.045 kb on + strand at 717.163 kb on - strand at 717.163 kb on - strand at 717.164 kb on + strand at 717.164 kb on + strand at 717.166 kb on - strand at 717.191 kb on + strand at 717.195 kb on - strand at 717.196 kb on + strand at 717.199 kb on - strand at 717.215 kb on - strand at 717.215 kb on - strand at 717.277 kb on + strand, within MMP_RS03800 at 717.277 kb on + strand, within MMP_RS03800 at 717.283 kb on - strand, within MMP_RS03800
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_H2_complete potassium hexahydroxoantimonate 0.125 mM remove 714,887 - +2.4 714,890 - +1.8 714,923 + MMP_RS03780 0.13 -1.1 714,942 - MMP_RS03780 0.17 +0.7 714,949 - MMP_RS03780 0.18 +2.9 715,023 - MMP_RS03780 0.32 +0.1 715,027 - MMP_RS03780 0.33 +0.5 715,090 - MMP_RS03780 0.45 +0.2 715,122 - MMP_RS03780 0.51 +2.2 715,184 + MMP_RS03780 0.62 +0.9 715,216 + MMP_RS03780 0.69 +0.3 715,254 - MMP_RS03780 0.76 +0.3 715,341 - +2.3 715,367 - +0.5 715,461 - MMP_RS03785 0.18 +0.3 715,573 + MMP_RS03785 0.50 +0.1 715,614 - MMP_RS03785 0.62 -0.9 715,735 + +1.4 715,780 - -1.9 715,794 - -0.9 715,798 - -1.7 715,798 - +0.9 715,798 - +1.7 715,821 - +1.6 715,822 + +0.3 715,822 + +0.5 715,822 + -0.9 715,822 + -0.3 715,824 + +1.4 715,870 - -1.7 715,892 - -0.6 715,893 + +0.3 716,093 - MMP_RS03790 0.48 +0.1 716,114 - MMP_RS03790 0.53 +1.2 716,140 + MMP_RS03790 0.59 -2.2 716,140 - MMP_RS03790 0.59 -1.5 716,140 - MMP_RS03790 0.59 -0.4 716,141 + MMP_RS03790 0.59 -0.6 716,142 - MMP_RS03790 0.60 -1.8 716,142 - MMP_RS03790 0.60 -0.8 716,144 - MMP_RS03790 0.60 +0.3 716,145 + MMP_RS03790 0.60 -0.2 716,145 + MMP_RS03790 0.60 -1.3 716,145 + MMP_RS03790 0.60 -1.9 716,165 + MMP_RS03790 0.65 +1.1 716,206 + MMP_RS03790 0.74 -0.1 716,252 - MMP_RS03790 0.85 -1.2 716,252 - MMP_RS03790 0.85 -1.0 716,258 - MMP_RS03790 0.86 -0.8 716,259 + MMP_RS03790 0.86 -0.9 716,326 - +0.7 716,350 - -0.3 716,388 + MMP_RS03795 0.11 -0.5 716,389 - MMP_RS03795 0.11 +0.3 716,389 - MMP_RS03795 0.11 +0.1 716,389 - MMP_RS03795 0.11 -1.5 716,389 - MMP_RS03795 0.11 +2.4 716,389 - MMP_RS03795 0.11 -0.1 716,389 - MMP_RS03795 0.11 +2.5 716,390 + MMP_RS03795 0.12 -0.1 716,390 + MMP_RS03795 0.12 +1.4 716,390 + MMP_RS03795 0.12 -1.8 716,391 - MMP_RS03795 0.12 +0.2 716,392 + MMP_RS03795 0.12 +1.4 716,392 + MMP_RS03795 0.12 -0.6 716,392 + MMP_RS03795 0.12 +0.8 716,425 + MMP_RS03795 0.18 +0.4 716,615 + MMP_RS03795 0.52 +0.7 716,686 - MMP_RS03795 0.65 -0.3 716,693 - MMP_RS03795 0.66 +0.5 716,693 - MMP_RS03795 0.66 +2.3 716,694 + MMP_RS03795 0.66 +0.2 716,700 + MMP_RS03795 0.67 +0.2 716,700 + MMP_RS03795 0.67 +2.1 716,706 - MMP_RS03795 0.68 -2.0 716,707 + MMP_RS03795 0.68 -0.0 716,773 + MMP_RS03795 0.80 -0.3 716,886 - +1.1 716,894 - +1.6 716,906 - +0.6 716,906 - +1.9 716,927 - +0.9 716,964 - +0.7 716,965 + +0.0 717,017 + +1.5 717,040 - -0.5 717,041 + -0.2 717,042 - -0.2 717,043 + +0.6 717,045 + -0.5 717,045 + +0.2 717,163 - -0.6 717,163 - -0.1 717,164 + -0.3 717,164 + -1.5 717,166 - -3.0 717,191 + -2.2 717,195 - +0.8 717,196 + +0.5 717,199 - -0.6 717,215 - +0.4 717,215 - +0.4 717,277 + MMP_RS03800 0.18 +2.6 717,277 + MMP_RS03800 0.18 -0.7 717,283 - MMP_RS03800 0.21 +1.0
Or see this region's nucleotide sequence