Strain Fitness in Methanococcus maripaludis S2 around MMP_RS01420

Experiment: McCas_H2_complete potassium hexahydroxoantimonate 0.125 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS01415 and MMP_RS08935 are separated by 331 nucleotidesMMP_RS08935 and MMP_RS01420 are separated by 241 nucleotidesMMP_RS01420 and MMP_RS01425 are separated by 229 nucleotides MMP_RS01415: MMP_RS01415 - DUF2067 domain-containing protein, at 262,131 to 262,748 _RS01415 MMP_RS08935: MMP_RS08935 - hypothetical protein, at 263,080 to 263,229 _RS08935 MMP_RS01420: MMP_RS01420 - hypothetical protein, at 263,471 to 263,668 _RS01420 MMP_RS01425: MMP_RS01425 - tyrosine--tRNA ligase, at 263,898 to 264,827 _RS01425 Position (kb) 263 264Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 262.625 kb on + strand, within MMP_RS01415at 262.682 kb on - strand, within MMP_RS01415at 262.682 kb on - strand, within MMP_RS01415at 262.682 kb on - strand, within MMP_RS01415at 262.729 kb on + strandat 262.734 kb on - strandat 262.748 kb on - strandat 262.762 kb on - strandat 262.789 kb on - strandat 262.790 kb on + strandat 262.793 kb on - strandat 262.796 kb on + strandat 262.824 kb on - strandat 262.825 kb on + strandat 262.825 kb on + strandat 262.828 kb on - strandat 262.828 kb on - strandat 262.834 kb on - strandat 262.835 kb on + strandat 262.839 kb on + strandat 262.849 kb on - strandat 262.926 kb on - strandat 262.927 kb on + strandat 263.020 kb on - strandat 263.020 kb on - strandat 263.069 kb on - strandat 263.072 kb on - strandat 263.427 kb on + strandat 263.454 kb on - strandat 263.476 kb on + strandat 263.486 kb on - strandat 263.618 kb on - strand, within MMP_RS01420at 263.621 kb on + strand, within MMP_RS01420at 263.681 kb on + strandat 263.706 kb on - strandat 263.732 kb on - strandat 263.736 kb on + strandat 263.758 kb on - strandat 263.778 kb on + strandat 263.801 kb on + strandat 263.838 kb on + strandat 263.838 kb on + strandat 263.902 kb on - strandat 263.909 kb on - strandat 264.233 kb on - strandat 264.238 kb on - strandat 264.238 kb on - strandat 264.291 kb on + strandat 264.341 kb on + strandat 264.368 kb on + strandat 264.512 kb on - strandat 264.547 kb on - strandat 264.547 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction McCas_H2_complete potassium hexahydroxoantimonate 0.125 mM
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262,625 + MMP_RS01415 0.80 +1.5
262,682 - MMP_RS01415 0.89 +2.4
262,682 - MMP_RS01415 0.89 -0.3
262,682 - MMP_RS01415 0.89 +0.9
262,729 + +0.9
262,734 - +1.5
262,748 - +0.5
262,762 - +1.6
262,789 - -0.6
262,790 + -0.4
262,793 - +1.5
262,796 + +2.7
262,824 - -1.1
262,825 + -0.3
262,825 + +0.9
262,828 - +1.4
262,828 - +1.5
262,834 - -3.6
262,835 + +0.0
262,839 + +1.3
262,849 - +1.9
262,926 - +0.7
262,927 + +0.6
263,020 - +1.7
263,020 - +0.5
263,069 - -1.0
263,072 - +0.9
263,427 + -0.3
263,454 - -1.8
263,476 + +0.5
263,486 - -0.6
263,618 - MMP_RS01420 0.74 +2.9
263,621 + MMP_RS01420 0.76 +1.1
263,681 + +0.3
263,706 - +2.2
263,732 - +0.9
263,736 + +1.5
263,758 - +0.1
263,778 + -1.6
263,801 + -0.5
263,838 + -0.5
263,838 + -0.2
263,902 - -2.0
263,909 - -1.1
264,233 - -2.4
264,238 - -3.2
264,238 - -1.7
264,291 + -1.3
264,341 + -1.8
264,368 + +0.0
264,512 - -1.1
264,547 - -2.5
264,547 - -3.0

Or see this region's nucleotide sequence