Strain Fitness in Methanococcus maripaludis S2 around MMP_RS04725

Experiment: McCas_H2_complete Irgasan 0.025 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS04715 and MMP_RS04720 are separated by 14 nucleotidesMMP_RS04720 and MMP_RS04725 are separated by 38 nucleotidesMMP_RS04725 and MMP_RS04730 are separated by 43 nucleotidesMMP_RS04730 and MMP_RS04735 are separated by 75 nucleotidesMMP_RS04735 and MMP_RS04740 are separated by 41 nucleotides MMP_RS04715: MMP_RS04715 - CBS domain-containing protein, at 901,511 to 901,891 _RS04715 MMP_RS04720: MMP_RS04720 - DedA family protein, at 901,906 to 902,388 _RS04720 MMP_RS04725: MMP_RS04725 - hypothetical protein, at 902,427 to 902,855 _RS04725 MMP_RS04730: MMP_RS04730 - flavodoxin family protein, at 902,899 to 903,480 _RS04730 MMP_RS04735: MMP_RS04735 - tautomerase family protein, at 903,556 to 903,750 _RS04735 MMP_RS04740: MMP_RS04740 - DUF473 domain-containing protein, at 903,792 to 904,169 _RS04740 Position (kb) 902 903Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3at 901.453 kb on - strandat 901.470 kb on - strandat 901.470 kb on - strandat 901.474 kb on - strandat 901.474 kb on - strandat 901.475 kb on + strandat 901.476 kb on - strandat 901.476 kb on - strandat 901.477 kb on + strandat 901.477 kb on + strandat 901.478 kb on - strandat 901.478 kb on - strandat 901.479 kb on + strandat 901.479 kb on + strandat 901.481 kb on - strandat 901.511 kb on + strandat 901.582 kb on - strand, within MMP_RS04715at 901.583 kb on + strand, within MMP_RS04715at 901.583 kb on + strand, within MMP_RS04715at 901.598 kb on + strand, within MMP_RS04715at 901.620 kb on - strand, within MMP_RS04715at 901.626 kb on - strand, within MMP_RS04715at 901.627 kb on + strand, within MMP_RS04715at 901.636 kb on - strand, within MMP_RS04715at 901.648 kb on - strand, within MMP_RS04715at 901.649 kb on + strand, within MMP_RS04715at 901.650 kb on - strand, within MMP_RS04715at 901.702 kb on + strand, within MMP_RS04715at 901.710 kb on - strand, within MMP_RS04715at 901.710 kb on - strand, within MMP_RS04715at 901.729 kb on - strand, within MMP_RS04715at 901.729 kb on - strand, within MMP_RS04715at 901.740 kb on - strand, within MMP_RS04715at 901.750 kb on + strand, within MMP_RS04715at 901.931 kb on + strandat 902.011 kb on + strand, within MMP_RS04720at 902.012 kb on - strand, within MMP_RS04720at 902.016 kb on - strand, within MMP_RS04720at 902.017 kb on + strand, within MMP_RS04720at 902.017 kb on + strand, within MMP_RS04720at 902.337 kb on + strand, within MMP_RS04720at 902.341 kb on - strandat 902.366 kb on - strandat 902.391 kb on - strandat 902.426 kb on + strandat 902.482 kb on + strand, within MMP_RS04725at 902.482 kb on + strand, within MMP_RS04725at 902.482 kb on + strand, within MMP_RS04725at 902.552 kb on - strand, within MMP_RS04725at 902.557 kb on + strand, within MMP_RS04725at 902.575 kb on - strand, within MMP_RS04725at 902.575 kb on - strand, within MMP_RS04725at 902.575 kb on - strand, within MMP_RS04725at 902.643 kb on - strand, within MMP_RS04725at 902.669 kb on - strand, within MMP_RS04725at 902.691 kb on - strand, within MMP_RS04725at 902.692 kb on + strand, within MMP_RS04725at 902.696 kb on - strand, within MMP_RS04725at 902.696 kb on - strand, within MMP_RS04725at 902.696 kb on - strand, within MMP_RS04725at 902.742 kb on + strand, within MMP_RS04725at 902.758 kb on + strand, within MMP_RS04725at 902.758 kb on + strand, within MMP_RS04725at 902.817 kb on - strandat 902.873 kb on - strandat 902.873 kb on - strandat 902.897 kb on - strandat 902.897 kb on - strandat 902.897 kb on - strandat 902.898 kb on + strandat 902.898 kb on + strandat 902.900 kb on - strandat 902.902 kb on - strandat 902.903 kb on + strandat 902.903 kb on + strandat 902.943 kb on - strandat 903.018 kb on + strand, within MMP_RS04730at 903.088 kb on - strand, within MMP_RS04730at 903.094 kb on + strand, within MMP_RS04730at 903.160 kb on + strand, within MMP_RS04730at 903.171 kb on - strand, within MMP_RS04730at 903.171 kb on - strand, within MMP_RS04730at 903.228 kb on + strand, within MMP_RS04730at 903.243 kb on - strand, within MMP_RS04730at 903.244 kb on + strand, within MMP_RS04730at 903.247 kb on - strand, within MMP_RS04730at 903.248 kb on + strand, within MMP_RS04730at 903.248 kb on + strand, within MMP_RS04730at 903.248 kb on + strand, within MMP_RS04730at 903.248 kb on + strand, within MMP_RS04730at 903.250 kb on + strand, within MMP_RS04730at 903.295 kb on - strand, within MMP_RS04730at 903.301 kb on + strand, within MMP_RS04730at 903.422 kb on + strandat 903.501 kb on - strandat 903.501 kb on - strandat 903.501 kb on - strandat 903.502 kb on + strandat 903.502 kb on + strandat 903.502 kb on + strandat 903.542 kb on - strandat 903.542 kb on - strandat 903.578 kb on + strand, within MMP_RS04735at 903.632 kb on + strand, within MMP_RS04735at 903.661 kb on - strand, within MMP_RS04735at 903.661 kb on - strand, within MMP_RS04735at 903.662 kb on + strand, within MMP_RS04735at 903.793 kb on - strandat 903.794 kb on + strandat 903.804 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction McCas_H2_complete Irgasan 0.025 mM
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901,453 - -5.2
901,470 - -3.9
901,470 - -2.6
901,474 - -3.9
901,474 - +0.1
901,475 + -1.7
901,476 - -3.9
901,476 - -5.1
901,477 + -4.1
901,477 + -2.3
901,478 - -0.9
901,478 - -1.6
901,479 + -3.4
901,479 + -0.3
901,481 - -0.6
901,511 + +1.9
901,582 - MMP_RS04715 0.19 -1.8
901,583 + MMP_RS04715 0.19 -0.8
901,583 + MMP_RS04715 0.19 -0.0
901,598 + MMP_RS04715 0.23 -1.3
901,620 - MMP_RS04715 0.29 -1.1
901,626 - MMP_RS04715 0.30 -1.4
901,627 + MMP_RS04715 0.30 +0.4
901,636 - MMP_RS04715 0.33 +0.1
901,648 - MMP_RS04715 0.36 +0.1
901,649 + MMP_RS04715 0.36 -0.4
901,650 - MMP_RS04715 0.36 -0.3
901,702 + MMP_RS04715 0.50 +0.4
901,710 - MMP_RS04715 0.52 -0.5
901,710 - MMP_RS04715 0.52 -1.5
901,729 - MMP_RS04715 0.57 -1.2
901,729 - MMP_RS04715 0.57 -0.3
901,740 - MMP_RS04715 0.60 +0.3
901,750 + MMP_RS04715 0.63 +1.6
901,931 + -1.8
902,011 + MMP_RS04720 0.22 -2.0
902,012 - MMP_RS04720 0.22 -3.4
902,016 - MMP_RS04720 0.23 -0.8
902,017 + MMP_RS04720 0.23 -3.6
902,017 + MMP_RS04720 0.23 -4.2
902,337 + MMP_RS04720 0.89 -0.6
902,341 - -1.0
902,366 - -1.1
902,391 - +0.0
902,426 + -0.1
902,482 + MMP_RS04725 0.13 -0.8
902,482 + MMP_RS04725 0.13 +0.1
902,482 + MMP_RS04725 0.13 +0.7
902,552 - MMP_RS04725 0.29 -1.2
902,557 + MMP_RS04725 0.30 +1.2
902,575 - MMP_RS04725 0.34 +0.6
902,575 - MMP_RS04725 0.34 -1.2
902,575 - MMP_RS04725 0.34 -0.5
902,643 - MMP_RS04725 0.50 +0.0
902,669 - MMP_RS04725 0.56 -2.0
902,691 - MMP_RS04725 0.62 -0.7
902,692 + MMP_RS04725 0.62 -2.6
902,696 - MMP_RS04725 0.63 -2.2
902,696 - MMP_RS04725 0.63 +1.1
902,696 - MMP_RS04725 0.63 +1.7
902,742 + MMP_RS04725 0.73 +0.8
902,758 + MMP_RS04725 0.77 -1.1
902,758 + MMP_RS04725 0.77 -1.1
902,817 - -1.7
902,873 - -0.6
902,873 - +0.2
902,897 - -2.2
902,897 - -0.5
902,897 - +1.8
902,898 + +0.7
902,898 + +0.6
902,900 - -0.4
902,902 - +1.6
902,903 + +0.4
902,903 + +3.3
902,943 - -0.6
903,018 + MMP_RS04730 0.20 +1.2
903,088 - MMP_RS04730 0.32 +0.5
903,094 + MMP_RS04730 0.34 -1.2
903,160 + MMP_RS04730 0.45 -1.5
903,171 - MMP_RS04730 0.47 +1.5
903,171 - MMP_RS04730 0.47 +0.1
903,228 + MMP_RS04730 0.57 +0.5
903,243 - MMP_RS04730 0.59 -0.8
903,244 + MMP_RS04730 0.59 -0.5
903,247 - MMP_RS04730 0.60 +2.2
903,248 + MMP_RS04730 0.60 -0.7
903,248 + MMP_RS04730 0.60 +1.2
903,248 + MMP_RS04730 0.60 +0.4
903,248 + MMP_RS04730 0.60 -1.6
903,250 + MMP_RS04730 0.60 -0.2
903,295 - MMP_RS04730 0.68 +1.1
903,301 + MMP_RS04730 0.69 -0.7
903,422 + -1.7
903,501 - +0.5
903,501 - +1.0
903,501 - -0.3
903,502 + -1.1
903,502 + +0.7
903,502 + +1.4
903,542 - +0.9
903,542 - -0.4
903,578 + MMP_RS04735 0.11 +0.8
903,632 + MMP_RS04735 0.39 +0.7
903,661 - MMP_RS04735 0.54 +1.7
903,661 - MMP_RS04735 0.54 +0.6
903,662 + MMP_RS04735 0.54 -0.4
903,793 - +0.7
903,794 + -0.4
903,804 - -0.4

Or see this region's nucleotide sequence