Experiment: McCas_H2_complete dimetridazole 0.00833333333333333 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS03050 and MMP_RS03055 are separated by 9 nucleotides MMP_RS03055 and MMP_RS03060 are separated by 94 nucleotides MMP_RS03060 and MMP_RS03065 are separated by 144 nucleotides MMP_RS03065 and MMP_RS03070 overlap by 8 nucleotides
MMP_RS03050: MMP_RS03050 - DUF115 domain-containing protein, at 575,501 to 576,217
_RS03050
MMP_RS03055: MMP_RS03055 - anaerobic ribonucleoside-triphosphate reductase activating protein, at 576,227 to 576,937
_RS03055
MMP_RS03060: MMP_RS03060 - MBL fold metallo-hydrolase, at 577,032 to 577,814
_RS03060
MMP_RS03065: MMP_RS03065 - AzlC family ABC transporter permease, at 577,959 to 578,675
_RS03065
MMP_RS03070: MMP_RS03070 - AzlD domain-containing protein, at 578,668 to 578,976
_RS03070
Position (kb) 577
578 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 576.093 kb on + strand at 576.455 kb on + strand at 576.558 kb on - strand at 576.964 kb on - strand at 576.983 kb on - strand at 576.984 kb on + strand at 576.991 kb on + strand at 576.992 kb on - strand at 576.993 kb on + strand at 576.993 kb on + strand at 577.007 kb on - strand at 577.105 kb on - strand at 577.324 kb on + strand, within MMP_RS03060 at 577.358 kb on - strand, within MMP_RS03060 at 577.446 kb on + strand, within MMP_RS03060 at 577.520 kb on + strand, within MMP_RS03060 at 577.551 kb on + strand, within MMP_RS03060 at 577.557 kb on + strand, within MMP_RS03060 at 577.587 kb on + strand, within MMP_RS03060 at 577.595 kb on + strand, within MMP_RS03060 at 577.841 kb on + strand at 577.845 kb on - strand at 577.845 kb on - strand at 577.848 kb on + strand at 577.880 kb on + strand at 577.880 kb on + strand at 577.881 kb on - strand at 578.099 kb on + strand, within MMP_RS03065 at 578.179 kb on - strand, within MMP_RS03065 at 578.621 kb on - strand at 578.621 kb on - strand at 578.622 kb on + strand at 578.653 kb on - strand at 578.690 kb on - strand at 578.691 kb on + strand at 578.691 kb on + strand at 578.719 kb on - strand, within MMP_RS03070 at 578.719 kb on - strand, within MMP_RS03070 at 578.720 kb on + strand, within MMP_RS03070 at 578.720 kb on + strand, within MMP_RS03070 at 578.720 kb on + strand, within MMP_RS03070
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_H2_complete dimetridazole 0.00833333333333333 mM remove 576,093 + -3.1 576,455 + -2.8 576,558 - +1.2 576,964 - +0.8 576,983 - -0.1 576,984 + +1.9 576,991 + +0.3 576,992 - -0.9 576,993 + +0.1 576,993 + -0.9 577,007 - -0.6 577,105 - +0.7 577,324 + MMP_RS03060 0.37 +0.3 577,358 - MMP_RS03060 0.42 -0.3 577,446 + MMP_RS03060 0.53 +2.2 577,520 + MMP_RS03060 0.62 +0.2 577,551 + MMP_RS03060 0.66 -1.4 577,557 + MMP_RS03060 0.67 -2.0 577,587 + MMP_RS03060 0.71 -2.2 577,595 + MMP_RS03060 0.72 +1.8 577,841 + +0.2 577,845 - -0.3 577,845 - +0.7 577,848 + -0.3 577,880 + -0.3 577,880 + -0.5 577,881 - -0.2 578,099 + MMP_RS03065 0.20 +2.0 578,179 - MMP_RS03065 0.31 +0.8 578,621 - +0.1 578,621 - -0.8 578,622 + -0.5 578,653 - +0.1 578,690 - -0.4 578,691 + +0.7 578,691 + -0.1 578,719 - MMP_RS03070 0.17 +0.0 578,719 - MMP_RS03070 0.17 -0.8 578,720 + MMP_RS03070 0.17 +0.2 578,720 + MMP_RS03070 0.17 -1.5 578,720 + MMP_RS03070 0.17 +0.5
Or see this region's nucleotide sequence